Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1106 |
Symbol | |
ID | 5321952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 1175836 |
End bp | 1176990 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640790047 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001326792 |
Protein GI | 150396325 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.820565 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACGC AACAAGCAAC TTTCGTTCGT GCTTCGATGA TCGAAGCCTC GCCAGCCCCT TCGCTTGAAA GAGGTGCTGC CTCCTGGCTG CGGCGAAATC TCTTCGCCAC GCCGAAGGAC AGCGTTCTGA CGATCATCAG CCTGCTTATC CTGGCGTGGC TGGTGCCCCC CGCAATCCAA TGGCTCTTCA TCGATGCCGC CTGGAGCGGC GGTGGCCGGG GCGTTTGCGC AACGCTGTCG CAGGGCGGTT CGCAGCCGGA AGGCTGGAGC GGCGCATGCT GGGCGTTCGT CAATGCGAAA TTCGCCCAGT TCCTTTTCGG CCGCTATCCG CTCGACGAGC GCTGGCGTCC TGCGCTGGTC GGCATTCTTT TCGTCCTGCT CCTCGTGCCT ATGCTGATAC CCAGGATCCC ATACAAGGGA CTGAACGCGC TTCTACTGCT GGGCGCCCTG CCCGTCCTCG CGGCGATCCT GCTCCCCGGC GGCTGGTTCG GCCTTACCTA TGTCGAAACG CCGCTCTGGG GCGGCCTGAT GGTCACCCTG GTACTGTCCT TCGTCGGAAT AGCCGTTTCG CTGCCGCTCG GCATTCTGCT GGCGCTCGGA CGCCGGTCGA ACATGCCGGT CATAAAAATG CTCTGCACGG CCTTCATCGA GGTCATCCGC GGCGTTCCGC TGATCACCGT GCTTTTCATG GCAAGCGTGA TGCTGCCGCT TTTCCTGCCG CAGGGCGTCA CCTTCGACAA GTTCCTGCGG GCCCTGATAG GCGTGTCGCT CTTCGCCTCC GCCTATATGG CGGAAGTGGT GCGCGGTGGC TTGCAGGCCA TCCCGAAAGG CCAGTATGAA GGCGCCGATT CACTGGGCCT CAGCTATTGG CAGAAAATGG GCTTCATCGT CCTGCCGCAG GCACTCAAGC TGGTTATCCC CGGCATCGTC AATACGTTCA TAGGCCTCTT CAAAGACACA TCGCTCGTAT CGATTATCGG CATGTTCGAC CTGCTCGGCA TCGTTCGCCT GAACTTCAGC GACACCAACT GGGCAAGCGC CGTCACGCCG CTGACCGGCC TGATCTTCGC GGGCTTCGTC TTTTGGCTTT TCTGCTTCGG CATGTCGCGC TATTCAGGCT TCATGGAACG CCTGCTCGAC AGAAGCCAGC GGTAA
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Protein sequence | MSTQQATFVR ASMIEASPAP SLERGAASWL RRNLFATPKD SVLTIISLLI LAWLVPPAIQ WLFIDAAWSG GGRGVCATLS QGGSQPEGWS GACWAFVNAK FAQFLFGRYP LDERWRPALV GILFVLLLVP MLIPRIPYKG LNALLLLGAL PVLAAILLPG GWFGLTYVET PLWGGLMVTL VLSFVGIAVS LPLGILLALG RRSNMPVIKM LCTAFIEVIR GVPLITVLFM ASVMLPLFLP QGVTFDKFLR ALIGVSLFAS AYMAEVVRGG LQAIPKGQYE GADSLGLSYW QKMGFIVLPQ ALKLVIPGIV NTFIGLFKDT SLVSIIGMFD LLGIVRLNFS DTNWASAVTP LTGLIFAGFV FWLFCFGMSR YSGFMERLLD RSQR
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