| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1088 |
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| Symbol | |
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| ID | 5321934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1155641 |
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| End bp | 1156654 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640790029 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001326774 |
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| Protein GI | 150396307 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.267708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTTGC CATCCACGGC TCTTTCATCT TCGTTTCTGA TCGGGAATGT CCAAATCCGT
AATCGCGTAG CGCTTGCGCC CATGTCCGGC GTGACGGATC TGCCCTTTCG CATGCTTGCC
TGGCGCTTCG GCGCGGGCTT TGTCGTGACC GAGATGGTGG CGAGTCGCGA GCTGGTTGGC
AATGCCGCCG AATCCTGGGC GCGGCTGAAG AATTCCGGCA TCGATCCGCA TATTGTCCAA
CTTGCCGGGC GTGAGGCGCA TTGGATGGCC GAGGCGGCGA GGATCGTTGA GGCCAATGGT
GCCGATATCA TCGATATCAA CATGGGCTGT CCCGCCAAGA AGGTTACCGG TGGCTATTCC
GGATCTGCAC TCATGCGCGA CCCGGATCAC GCGCTGTCTC TGATCGAGGC GACGGTGAAA
GCAGCGACGG TTCCGGTAAC GCTCAAGATG CGACTCGGTT GGGATGAGAA TTCGATCAAT
GCGCCGCTGA TTGCCCGCAG AGCCGAGGAA GCCGGCGTGA AGGCGATCAC CATTCACGGG
CGCACGCGCA TGCAGTTCTA CAACGGCAAG GCCGATTGGG ATGCGATCCG CTCGGTCCGC
GAGGTGACTT CGGTCCCGCT GATCGCCAAT GGCGATGTTG ATTCCGTTGC GGATGCGCAT
GAAATCCTGC GCCGCTCGGG TGCCGACGCC GTCATGGTCG GTCGATCTTG CCAGGGTCGG
CCGTGGCATG CGGGCGTGCT CGCCGGCACG GCTGCCCATC CGGATGCGGC GGGCGTCGCA
CGCATATTTG CGGAGCATTA CGAGACGCTC CTTGAATTCT ACGGCGTGGA GGTCGGCCTT
CGCACTGCCC GAAAGCATGC CGGCTGGTAT CTCGATCGTT TCGCAACCGA GCTCCCCGTC
TCGCAGAAGG CTGCGATCCT CACATCGACG GACACGGTTT TCGTGCGCGA CGGCGTTGCG
GCCGCCATTG CCCGCTCCGG CGATGTGGCG GCGAGGGAGG AGATTGCGGC ATGA
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| Protein sequence | MHLPSTALSS SFLIGNVQIR NRVALAPMSG VTDLPFRMLA WRFGAGFVVT EMVASRELVG
NAAESWARLK NSGIDPHIVQ LAGREAHWMA EAARIVEANG ADIIDINMGC PAKKVTGGYS
GSALMRDPDH ALSLIEATVK AATVPVTLKM RLGWDENSIN APLIARRAEE AGVKAITIHG
RTRMQFYNGK ADWDAIRSVR EVTSVPLIAN GDVDSVADAH EILRRSGADA VMVGRSCQGR
PWHAGVLAGT AAHPDAAGVA RIFAEHYETL LEFYGVEVGL RTARKHAGWY LDRFATELPV
SQKAAILTST DTVFVRDGVA AAIARSGDVA AREEIAA
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