| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1054 |
|---|
| Symbol | thrS |
|---|
| ID | 5321900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 1121556 |
|---|
| End bp | 1123538 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640789997 |
|---|
| Product | threonyl-tRNA synthetase |
|---|
| Protein accession | YP_001326742 |
|---|
| Protein GI | 150396275 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0441] Threonyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.290687 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.56724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCATT CCGTTTCCCT TACATTCCCC GATGGCTCCG TGCGAGAATT CGCCCCCGGC
ACGACCGGCC GCGATGTTGC GGAATCGATC TCGAAGTCGC TCGCCAAAAA GTCCGTCGCG
ATCGCCATCG ACGGCGAGCT GCGTGACCTC TCGGATCCCG TGACGGAAGG CAGGATTGAG
ATCGTGACGC GCGAGGACAA GCGCGCGCTA GAGCTCATCC GCCACGACGC GGCCCATGTC
ATGGCGGAAG CCGTCCAGGA GTTGTGGCCG GGAACGCAGG TGACCATTGG CCCGGTCATC
GACAATGGTT TCTATTACGA CTTCGCAAAG AACGAGCCCT TCACGCCCGA CGACCTGCCG
GTCATCGAGA AGAGGATGAG GGAGATCATC GCGCGCAACA AGCCTTTCAC CAAGGAAGTC
TGGTCGCGCG ACAAGGCCAA GGAGGTCTTT GCCGTCAAGG GCGAGAGTTA CAAGGTTGAA
CTCGTCGACG CTATCCCCGA AGGCCAGGAC CTGAAGATTT ATTACCAGGG CGACTGGTTC
GATCTCTGCC GGGGGCCACA TATGGCTTCG ACGGGCCAGA TCGGCACCGC CTTCAAATTG
ATGAAGGTCG CCGGCGCCTA CTGGCGTGGC GACAGCAACA ATCCGATGCT GACGCGCATC
TACGGCACCG CCTGGCACAC GCAGGAGGAG CTCGATCAGT ATCTGCACGT GCTGGCCGAG
GCCGAAAAGC GCGACCATCG CCGGCTCGGC CGCGAGATGG ACCTGTTCCA TTTCCAGGAG
GAAGGACCGG GCGTGGTCTT CTGGCACGGA AAGGGCTGGC GCATCTTCCA GAGCCTCGTC
GCCTATATGC GCCGCCGCCT CGAAGGCGAT TATCAGGAGG TCAACGCTCC GCAGGTGCTC
GACAAGTCTC TCTGGGAGAC CTCCGGCCAC TGGGGATGGT ATCGTGACAA CATGTTCAAG
GTGACTGTCG CCGGGGACGA TACGGATGAC GATCGCGTCT TCGCGCTGAA GCCGATGAAT
TGCCCCGGGC ACATCCAGAT CTTCAAGCAT GGCTTGAAGT CTTACCGGGA ACTACCTGTA
AGGCTGGCAG AATTCGGTGC CGTCCATCGC TACGAGCCAT CAGGTGCGCT GCACGGCCTG
ATGCGCGTGC GCGGCTTCAC CCAGGACGAC GCGCACATCT TCTGCACCGA TGAGCAGATG
GCGGCCGAAT GCCTGAAGAT CAACGATCTT ATCCTCTCCG TCTATGAGGA CTTCGGCTTC
AAGGAGATCG TCGTGAAGCT GTCGACGCGG CCGGAAAAGC GTGTGGGCTC CGATGAACTG
TGGGACCGCG CCGAGGCGGT GATGACGGAG GTCTTGAAGA CGATCGAGGC GCAGTCCGAG
GGCCGCATCA AGACCGGCAT CCTGCCGGGC GAGGGTGCGT TCTACGGTCC GAAATTCGAA
TATACGCTGA AGGACGCAAT CGGCCGCGAA TGGCAGTGCG GAACGACGCA GGTCGATTTC
AATCTGCCGG AGCGCTTCGG CGCCTTCTAC ATCGACAGCG AATCCGAGAA GCGTCAGCCG
GTCATGATCC ATCGCGCCAT TTGCGGGTCG ATGGAGCGTT TCCTCGGCAT CCTGCTCGAG
AATTTTGCGG GCCATATGCC GCTGTGGATC TCGCCTCTGC AGGTGGTGGT CGCAACGATC
ACCTCGGAAG CGGATGATTA TGGCCGCGAA GTGGCCGAAC GCTTGCGGGA CGCCGGCCTG
ACGGTCGAGA CCGATTTCCG AAACGAGAAG ATCAACTACA AGGTCCGCGA ACACTCGGTA
ACAAAGGTTC CGGTGATCGT CGTCTGCGGC AAGCGGGAAG CAGAGGAACG TTCCGTCAAC
ATCCGTCGCC TGGGCTCCCA GGCGCAGACG GCTATGTCGC TCGACGAGGC AGTTGCTTCG
CTCTCCGCCG AAGCCACGGC GCCGGACCTC AAGCGCAAGG CGGAGCGGAC CGCCCGCGCC
TGA
|
|---|
| Protein sequence | MSHSVSLTFP DGSVREFAPG TTGRDVAESI SKSLAKKSVA IAIDGELRDL SDPVTEGRIE
IVTREDKRAL ELIRHDAAHV MAEAVQELWP GTQVTIGPVI DNGFYYDFAK NEPFTPDDLP
VIEKRMREII ARNKPFTKEV WSRDKAKEVF AVKGESYKVE LVDAIPEGQD LKIYYQGDWF
DLCRGPHMAS TGQIGTAFKL MKVAGAYWRG DSNNPMLTRI YGTAWHTQEE LDQYLHVLAE
AEKRDHRRLG REMDLFHFQE EGPGVVFWHG KGWRIFQSLV AYMRRRLEGD YQEVNAPQVL
DKSLWETSGH WGWYRDNMFK VTVAGDDTDD DRVFALKPMN CPGHIQIFKH GLKSYRELPV
RLAEFGAVHR YEPSGALHGL MRVRGFTQDD AHIFCTDEQM AAECLKINDL ILSVYEDFGF
KEIVVKLSTR PEKRVGSDEL WDRAEAVMTE VLKTIEAQSE GRIKTGILPG EGAFYGPKFE
YTLKDAIGRE WQCGTTQVDF NLPERFGAFY IDSESEKRQP VMIHRAICGS MERFLGILLE
NFAGHMPLWI SPLQVVVATI TSEADDYGRE VAERLRDAGL TVETDFRNEK INYKVREHSV
TKVPVIVVCG KREAEERSVN IRRLGSQAQT AMSLDEAVAS LSAEATAPDL KRKAERTARA
|
|---|
| |