Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1028 |
Symbol | |
ID | 5321874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1098221 |
End bp | 1099537 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640789971 |
Product | hypothetical protein |
Protein accession | YP_001326716 |
Protein GI | 150396249 |
COG category | [S] Function unknown |
COG ID | [COG2718] Uncharacterized conserved protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000562968 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGAATT TCATCGACCG CCGCCTCAAT CCGAAGGACA AGAGTCTCGG CAACAGGCAA CGTTTCCTGA AACGGGCGCG AGAGGAGCTT AAACGAACCA TCAAAGAACG GGTCAAGTCG GGCAAGATCG CGGATGTGGA TGCGGAGCAG AACGTGTCCA TGCCGGCCCG CGGCGTCAAC GAGCCGGCCT TCCAGCCGGA CTCCAACAGC GGCGAGCGGC GCCACGTCCT GCCGGGAAAC CGGGAGTTCG CGGCAGGAGA CCGCATCCCG AAAAGGGGTG GAGGCGGCGG CGCCGGAAAT GCGGGCGCCG GCACCGGCCA AAGCGAGGAC GAGTTTCAGT TCGTCCTTTC ACGCGAAGAG GTGCTCGACC TCTTCTTCGA GGATCTCGAA CTCCCCGACA TGGTCAAGCT CAATCTGAAG GAGTCGGTTA CGTTCAAGCG GCGACGAGCC GGCTTCAGCG CAAGCGGCTC TCCCACGAAC ATCAATGTCG GGCGCACCAT GCGCAACAGC TATGGGCGCC GAATCGCATT GCGGCGGCCG TCGCGCCGGG AAATCGAGGC CCTGGCCGAT GAGATTGCCA GGCTCGAAAC CGAGCCTGGC GGGCGGAACA AGCATCGTCA GCGATTGGAG GAACTGCGAC AGACGCTCGA CAGTCTCGAG CGACGGCGCC GGCGAATTCC CTATGTCGAT CCGGTAGACA TTCGCTTCAA TCGTTTCGAG CCTCAGCCTT TACCGAATGC GAGCGCAGTC ATGTTCTGCC TCATGGATGT CTCGGCGTCG ATGGGGGAGC GGGAGAAGGA CCTCGCCAAA CGTTTTTTCG TGCTGCTGCA TCTCTTCCTC AAGCGGCGCT ACGAGCGGAT CGACATCGTA TTCATCCGGC ACACCGATGA AGCCGGCGAG GTCGACGAGA ACACGTTTTT CTATAGCAAG CAGAGCGGCG GCACGGTCGT TTCCACCGCC CTGGAGGAGA TGCTGCGCGT TATCAGGGAG CGTTACCCTG CCAACGAATG GAACATCTAC GCCGCACAGG CGTCGGACGG CGAGAATATC TCAGGCGACT CCGAACGCTG CGCCTCCCTT CTTCATGACG AGCTCATGGG ACTTTGCCAA TATTATGCCT ATGTCGAGAT CATCGATGAG CGCGAGACGG AGATTTTCGG CACCACCGAC AACGGGACTT CGCTCTGGCG AGCCTACCGC ATCGTCGATG GCGAATGGCC GAATTTCCAG ATGACCCGCA TCGCGAAACC GGCGGATATC TATCCCGTCT TCCGAAAACT CTTCGGCAAG CAGCCGGAGA TGCAATTGCG CAAGTAA
|
Protein sequence | MPNFIDRRLN PKDKSLGNRQ RFLKRAREEL KRTIKERVKS GKIADVDAEQ NVSMPARGVN EPAFQPDSNS GERRHVLPGN REFAAGDRIP KRGGGGGAGN AGAGTGQSED EFQFVLSREE VLDLFFEDLE LPDMVKLNLK ESVTFKRRRA GFSASGSPTN INVGRTMRNS YGRRIALRRP SRREIEALAD EIARLETEPG GRNKHRQRLE ELRQTLDSLE RRRRRIPYVD PVDIRFNRFE PQPLPNASAV MFCLMDVSAS MGEREKDLAK RFFVLLHLFL KRRYERIDIV FIRHTDEAGE VDENTFFYSK QSGGTVVSTA LEEMLRVIRE RYPANEWNIY AAQASDGENI SGDSERCASL LHDELMGLCQ YYAYVEIIDE RETEIFGTTD NGTSLWRAYR IVDGEWPNFQ MTRIAKPADI YPVFRKLFGK QPEMQLRK
|
| |