Gene Smed_1022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_1022 
Symbol 
ID5321867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1091628 
End bp1092287 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content61% 
IMG OID640789964 
Producthypothetical protein 
Protein accessionYP_001326710 
Protein GI150396243 
COG category[S] Function unknown 
COG ID[COG4291] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGGGA AGGCAGGCCT GCGGCACTGG CCGTTCTACC TAGCCCTTAC AGGTGGGTTG 
CTCGGTCTGC CGATCGGTTT TGCGCTGTTT CGCGCAGAGG CGATCGAGGT GGCGGCGATA
CTGTTCTTCC TTATTTATCT GTCGATCAAC GCACTGCGAC TTCCCAAGCT TACAGGCAGC
TATCTCCAAA CTCATGCGCG CGAGACGGGA GAGCCGGAGC CGATCATCTT TCTCGTGACG
CTCGGAGCCG CGGCGATCTC TCTCGTAGCT CTGTTCCTCG CGCTCAACCG CACTGGCGAT
GGCGGTGCGG TTGAGCTCTC GATCGCTTTC ACCGCCGTCG CGCTCGGCTG GGCGACAGTC
CACACCATGG CAGGGCTGCA CTATGCTCAC CTCTATTGGA TTGCGCGCCA TCACGAGCCA
GACAGCGATC GCCCCGCTCG AGGTCTCGCC TTTCCGGAAA CCGACAGCCC CGGCGGATAC
GATTTTCTCT ATTTCGCTTT CGTCATTGGA ATGACAGCGC AGACTTCCGA CGTCGCCATC
ACGACGACGG CAATGCGGCG TGTCAACCTG GTGCACGCGA TCGTCTCGTT CTTCTTCAAC
ACGGTGCTGC TTGCCGCCGC CGTCAATGCC GCGGTTCAGC TTGCCGGCGG CGCCCCATGA
 
Protein sequence
MDGKAGLRHW PFYLALTGGL LGLPIGFALF RAEAIEVAAI LFFLIYLSIN ALRLPKLTGS 
YLQTHARETG EPEPIIFLVT LGAAAISLVA LFLALNRTGD GGAVELSIAF TAVALGWATV
HTMAGLHYAH LYWIARHHEP DSDRPARGLA FPETDSPGGY DFLYFAFVIG MTAQTSDVAI
TTTAMRRVNL VHAIVSFFFN TVLLAAAVNA AVQLAGGAP