| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_1014 |
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| Symbol | |
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| ID | 5321859 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1084606 |
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| End bp | 1086003 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789956 |
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| Product | protease Do |
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| Protein accession | YP_001326702 |
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| Protein GI | 150396235 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.370386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.451123 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCTTTG GCCACCGAGC CGCCGCGGCT ATCGTCCTCG CAATTGCCAT TTCGACGCCT
GCGATGGCTC AGGATACCAG GACTGTGCCG CAGTCGCGGG CGGAGATGCA ACTCTCTTTC
GCGCCGCTCG TCAAACAGAC GGCGAATGCG GTCGTGAACG TCTATGCCGA GCGCGCGGTG
GAACGGCGGT CGATCTTTGC CGGGGACCCT TTCTTCGAGG AGTTTTTCGG TCAGCGGATG
CCCAATCGCA CCGAAAAGCA GTCATCGCTC GGATCAGGCG TGATCGTCGG CCGCAACGGC
CTGGTCGTCA CCAACAACCA TGTCATCGAT GGTGCCGACG ATATCAAGGT GGCACTGGCC
GACGGGCGGG AGTTCCCTTG CAAGCTTATA TTGAAGGACG ATCGCCTGGA CCTCGCGGTC
ATGAAAATCC AGTCGGACGG CCCGTTCGAC ATCATCCCGA TCGGCGATTC CGACGCGGTG
GAAGTCGGGG ACCTTGTGCT GGCGATGGGT AATCCTTTCG GTGTCGGGCA GACGGTCACG
AGCGGCATCG TGTCGGCACT CGCCCGTAAC CAGATTTCCA ACGGGGATTT CGGTTTTTTC
ATCCAGACGG ATGCAGCCAT CAATCCCGGC AATTCCGGCG GGGGTCTGAT CGACATGAAG
GGCGAGTTGA TCGGAATCAA CACCGCGATT TTCTCAAGAG GCGGCGGTTC CAACGGTGTC
GGCTTTGCGA TCCCTGCCAA TCTGGTCAAG GTTTTCGTGG CCTCCGCTGA AGGAGGCAAT
GGCTCATTCA TTCGGCCCTT CGTCGGAGCG ACCTTCGAAC CGGTGACGTC CGACGTGGCC
GAGGCGCTTG GACTTGAACG GGCGCGTGGG GCGCTGGTGA CGGCGGTTGT CGCGGGCGGT
CCGGCCGAGA GCGCCGGCAT GCGCCCCGGC CAGGTGGTCA CCGCCGTCAA CGATATACCG
GTCGAACACC CCGATGCGCT CGGCTACCGC CTGACGACGG TCGGGATCGG GCATGAGGCG
CGCGTGACGG TTTCGGAGAA CGGCGATTTG CGCGAAATCA CCCTCCGGCT GGAGCGGGCG
CCGGAAACTC AGCCGCGTGA CGAACGGCTG ATCGAGGGTC GCAATCCCTT CGCCGGCGCC
GTGGTGGCAA ATCTCTCACC CCGGCTTGCC GAGGAGTTGC GCATGCCGAC GTCGCTGCAG
GGCGTGGTGG TCACCGAGAT CAATCGCGGC TCGCCGGCCG CTCGCATCGG CCTCGAACCG
AAAGACATTG TTCGTTCTGT CAACGGCACC GCAATCGAGA GTTCGAAGAC ACTGGAAAGC
GTCGTCGCCG AGGATGCTTC CTTCTGGCGT GTCGAGATCG AACGCAACGG CCAGATCATC
CGTCAGTTCT TCCGATGA
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| Protein sequence | MIFGHRAAAA IVLAIAISTP AMAQDTRTVP QSRAEMQLSF APLVKQTANA VVNVYAERAV
ERRSIFAGDP FFEEFFGQRM PNRTEKQSSL GSGVIVGRNG LVVTNNHVID GADDIKVALA
DGREFPCKLI LKDDRLDLAV MKIQSDGPFD IIPIGDSDAV EVGDLVLAMG NPFGVGQTVT
SGIVSALARN QISNGDFGFF IQTDAAINPG NSGGGLIDMK GELIGINTAI FSRGGGSNGV
GFAIPANLVK VFVASAEGGN GSFIRPFVGA TFEPVTSDVA EALGLERARG ALVTAVVAGG
PAESAGMRPG QVVTAVNDIP VEHPDALGYR LTTVGIGHEA RVTVSENGDL REITLRLERA
PETQPRDERL IEGRNPFAGA VVANLSPRLA EELRMPTSLQ GVVVTEINRG SPAARIGLEP
KDIVRSVNGT AIESSKTLES VVAEDASFWR VEIERNGQII RQFFR
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