Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_1003 |
Symbol | rpsE |
ID | 5321848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 1076377 |
End bp | 1076946 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640789945 |
Product | 30S ribosomal protein S5 |
Protein accession | YP_001326691 |
Protein GI | 150396224 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0098] Ribosomal protein S5 |
TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0840798 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00550147 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCACAAG AAAGAAGAGG TTCTCGCGAA GATCGCCAGA ACCGCGAAGA GCGCGACAGC GAATTCGTCG ACAAGCTCGT CGCTATCAAC CGCGTCGCCA AGGTGGTGAA GGGCGGTCGC CGTTTCGGTT TCGCCGCTCT CGTCGTCGTG GGCGACCAGA AGGGCCGTGT CGGCTTCGGC CATGGTAAGG CACGTGAAGT GCCGGAAGCC ATCCGCAAGG CAACGGAAGC CGCCAAGCGC GATCTGATTT TCGTACCGCT TCGCGGTGGC CGCACTCTGC ATCACGACGT TCACGGCCGT CATGGAGCCG GCAAGGTGCT GCTGCGCTCG GCCAAGCCCG GTACCGGTAT CATCGCCGGC GGTCCAATGC GCGCCGTCTT CGAGACGCTC GGCGTTCATG ACGTCGTAGC CAAGTCGACC GGTTCGTCAA ACCCCTACAA CATGGTTCGC GCAACCTTCG ACGCGCTCAA GAACCAGATG CACCCGAAGG ACATCGCGGC ACAGCGCGGC ATGAAGTACG CCACGCTCCA GTCCCGTCGC GTTTCCGCCG GCGTTGCTTC CGAAGAATAA
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Protein sequence | MAQERRGSRE DRQNREERDS EFVDKLVAIN RVAKVVKGGR RFGFAALVVV GDQKGRVGFG HGKAREVPEA IRKATEAAKR DLIFVPLRGG RTLHHDVHGR HGAGKVLLRS AKPGTGIIAG GPMRAVFETL GVHDVVAKST GSSNPYNMVR ATFDALKNQM HPKDIAAQRG MKYATLQSRR VSAGVASEE
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