Gene Smed_0984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0984 
Symbol 
ID5321829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1066568 
End bp1067743 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content61% 
IMG OID640789926 
Productelongation factor Tu 
Protein accessionYP_001326672 
Protein GI150396205 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0050] GTPases - translation elongation factors 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0503391 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAGA GCAAATTTGA GCGCAATAAG CCGCACGTCA ACATTGGCAC GATTGGCCAC 
GTTGACCATG GCAAGACGTC GCTGACGGCA GCGATCACGA AGTATTTCGG CGAGTTCAAG
GCGTACGACC AGATCGACGC TGCGCCGGAA GAAAAGGCCC GCGGTATCAC CATTTCGACG
GCGCACGTCG AATACGAGAC GCCGAACCGT CACTATGCGC ATGTCGACTG CCCCGGCCAC
GCCGACTACG TCAAGAACAT GATCACCGGT GCGGCGCAGA TGGACGGCGC GATCCTGGTT
GTTTCGGCTG CCGACGGCCC GATGCCGCAG ACGCGCGAAC ACATCCTGCT GGCCCGCCAG
GTCGGCGTTC CGGCGATTGT CGTGTTCCTG AACAAGGTCG ACCAGGTCGA CGATGCGGAG
CTGCTGGAGC TCGTTGAGCT GGAAGTGCGC GAACTTCTGT CGTCCTACGA ATTCCCGGGC
GACGATATTC CGATCGTCAA GGGTTCGGCT CTGGCCGCAC TTGAAGATTC GGACAAGAAG
ATCGGCGAAG ATGCGATCCG CGAGCTGATG GCTGCGGTTG ACGCCTACAT CCCGACGCCT
GAGCGTCCGA TCGACCAGCC GTTCCTGATG CCGATCGAAG ACGTGTTCTC GATCTCGGGC
CGCGGCACGG TCGTGACCGG CCGCGTCGAG CGCGGCATCG TCAAGGTCGG TGAGGAAATC
GAAATCGTCG GCATCCGTCC GACGACGAAG ACGACCTGCA CGGGCGTTGA AATGTTCCGC
AAGCTTCTCG ATCAGGGCCA GGCCGGCGAC AACATCGGCG CGCTTCTGCG CGGTGTCGAC
CGTAACGGTG TCGAGCGCGG CCAGATTCTG TGCAAGCCGG GTTCGGTGAA GCCGCACCGC
AAGTTCAAGG CTGAAGCCTA CATCCTGACG AAGGAAGAGG GTGGCCGTCA TACGCCGTTC
TTCACCAACT ACCGTCCGCA GTTCTACTTC CGTACGACGG ACGTGACGGG CATCGTGACG
CTGCCGGAAG GCACGGAAAT GGTTATGCCG GGCGACAACG TGACCGTTGA CGTCGAGCTG
ATCGTGCCGA TCGCGATGGA AGAAAAGCTG CGCTTCGCTA TCCGCGAAGG CGGCCGTACC
GTCGGCGCAG GCATCGTCGC CTCCATCGTC GAGTAA
 
Protein sequence
MAKSKFERNK PHVNIGTIGH VDHGKTSLTA AITKYFGEFK AYDQIDAAPE EKARGITIST 
AHVEYETPNR HYAHVDCPGH ADYVKNMITG AAQMDGAILV VSAADGPMPQ TREHILLARQ
VGVPAIVVFL NKVDQVDDAE LLELVELEVR ELLSSYEFPG DDIPIVKGSA LAALEDSDKK
IGEDAIRELM AAVDAYIPTP ERPIDQPFLM PIEDVFSISG RGTVVTGRVE RGIVKVGEEI
EIVGIRPTTK TTCTGVEMFR KLLDQGQAGD NIGALLRGVD RNGVERGQIL CKPGSVKPHR
KFKAEAYILT KEEGGRHTPF FTNYRPQFYF RTTDVTGIVT LPEGTEMVMP GDNVTVDVEL
IVPIAMEEKL RFAIREGGRT VGAGIVASIV E