| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0978 |
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| Symbol | rpoB |
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| ID | 5321823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1053840 |
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| End bp | 1057982 |
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| Gene Length | 4143 bp |
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| Protein Length | 1380 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640789920 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001326666 |
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| Protein GI | 150396199 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.344498 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.02017 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAGA CCCTTTCGTT TAACGGTCGT AGGCGCGTAC GCAAGTTTTT TGGTAAAATT
CCCGAAGTCG CGGAGATGCC GAACCTCATC GAGGTTCAGA AGGCATCCTA CGACCAGTTC
CTCATGGTGG ACGAGCCCCA AGGCGGGCGG CCGGACGAGG GGCTTCAAGC CGTTTTCAAA
TCGGTGTTTC CGATAAAGGA TTTCTCCGGC GCTTCGATGC TCGAATTCGT TTCCTACGAA
TTCGAGGCAC CCAAGTTCGA CGTCGAGGAG TGCCGTCAGC GCGACCTGAC CTATGCGGCG
CCTCTCAAGG TCACGTTGCG CCTGATCGTG TTCGATATCG ACGAGGACAC CGGCGCCAAG
TCCATCAAGG ACATCAAGGA ACAGAACGTC TACATGGGCG ACATGCCGCT CATGACGGAC
AACGGAACCT TCATCGTCAA CGGCACCGAG CGCGTCATCG TCTCGCAGAT GCACCGTTCG
CCAGGTGTCT TTTTCGATCA TGACAAGGGC AAGAGCCACT CGTCCGGCAA ACTGCTCTTT
GCCGCCCGCG TGATCCCCTA TCGTGGTTCG TGGCTCGATA TCGAATTCGA TGCGAAGGAC
ATCGTCCATG CGCGCATCGA CCGCCGCCGC AAGATCCCGG TGACGTCGCT TCTGATGGCG
CTCGGAATGG ACGGCGAAGA GATTCTCGAC ACCTTCTATA CGAAGTCGCT CTACCAGCGC
GACGGCGAGG GCTGGCGCGT TCCGTTCCAG CCTGACGCGC TCAAGGGCCA GAAGGCCTTG
GCAGACCTGA TCGACGCCGA TACCGGCGAA GTGGTCGTCG AAGGCGGCAA GAAGCTGACG
CCGCGCCTGC TTCGTCAGTT GCAGGACAAG GGCCTGAAGG CCCTCAAGGC GACTGATGAT
GATCTTTACG GCAACTACCT CGCCGAGGAT GTGGTCAACT TCGAGACAGG TGAAATCTAC
CTGGAAGCCG GCGACGAAAT CGACGAGAAG ACGCTTCCGG TCATCCTTTC CGCCGGGTTC
GACGAGATCC CGGTTCTCGA CATAGACCAC ATCAATATCG GCGCCTATAT CCGCAATACG
CTTGCGGCCG ACAAGAACGA AAACCGACAG GACGCGCTGT TCGATATCTA CCGCGTCATG
CGTCCGGGTG AGCCGCCGAC GATGGATTCG GCCGAAGCCA TGTTCAATGC GCTCTTCTTC
GATGCCGAGC GCTACGACCT TTCGGCCGTC GGCCGCGTCA AGATGAACAT GCGTCTTGAT
CTGGATGTTC CGGATACGGT TCGCACGCTG CGCAAGGAAG ATATCCTGGC CGTCGTCAAG
ATGCTCGTCG AACTGCGTGA CGGCAAGGGC GAGATCGACG ACATCGACAA CCTCGGCAAC
CGCCGCGTCC GGTCGGTGGG CGAGTTGATG GAGAACCAGT ATCGGCTGGG TCTGCTGCGC
ATGGAACGTG CGATCAAGGA GCGCATGTCC TCGATCGAGA TCGACACAGT GATGCCGCAA
GACCTCATCA ACGCGAAGCC GGCTGCCGCC GCGGTGCGTG AATTCTTCGG CTCGTCTCAG
CTTTCGCAGT TCATGGACCA GGTGAACCCG CTCTCGGAAA TCACCCACAA GCGCCGCCTT
TCGGCACTGG GTCCTGGCGG TCTTACCCGT GAACGCGCCG GCTTCGAAGT TCGCGACGTG
CATCCGACGC ATTATGGCCG TATCTGCCCG ATCGAAACGC CGGAAGGCCC GAACATCGGT
CTGATCAACT CGCTTGCGAC ATTTGCCCGC GTCAACAAGT ATGGCTTCAT CGAAAGCCCT
TACCGTAAGA TCGTCGACGG CAAGGTGACC AGCGACGTCG TCTATCTCTC GGCGATGGAA
GAAGCCAAGT ATCACGTTGC GCAAGCGAAC TCGGTGCTGG ACGAAGACGG CTCCTTCTCG
GAAGAGTTCG TCGTTTGCCG CCACGCCGGC GAAGTCATGC TGGCGCCGCG CGACAATATC
AACCTGATGG ACGTTTCGCC GAAGCAGCTC GTCTCCGTCG CGGCCGCGCT CATTCCGTTC
CTCGAGAACG ATGACGCCAA CCGCGCGCTG ATGGGTTCGA ACATGCAGCG TCAGGCCGTG
CCGTTGCTGC GTGCGGAGGC ACCCTTCGTC GGCACAGGCA TGGAGCCGGT CGTCGCGCGT
GACTCCGGTG CTGCTATCGC TGCGCGCCGC GGCGGTATCG TGGATCAGGT AGACGCGACG
CGTATCGTTA TCCGCGCCAC CGAGGACCTG GATCCGTCCA AGTCCGGCGT CGATATCTAC
CGCCTGCAGA AGTTCCAGCG CTCCAACCAG AACACCTGCG TCAACCAGCG CCCGCTGGTC
ACCGTCGGTG ACGTTCTGAA CAAGGGCGAC ATCATCGCGG ATGGTCCGTC TACGGACCTC
GGCGATCTGG CGCTCGGCCG CAACGCGCTC GTCGCGTTCA TGCCCTGGAA CGGCTACAAC
TACGAAGATT CGATCCTGCT TTCCGAGCGG ATCGTGCGCG ATGACGTCTT CACGTCCATC
CACATCGAAG AATTCGAGGT GATGGCGCGT GATACCAAGC TTGGTCCGGA AGAAATCACC
CGTGACATTC CGAACGTTTC GGAAGAAGCG CTGAAGAACC TCGACGAAGC CGGCATCGTC
TATATCGGCG CCGAAGTTCA GCCGGGCGAC ATTCTCGTAG GCAAGATCAC GCCGAAGGGC
GAAAGCCCAA TGACGCCGGA AGAAAAGCTT CTGCGCGCCA TCTTCGGTGA GAAGGCGTCG
GATGTTCGTG ATACCTCCAT GCGCATGCCT CCGGGCACGT TCGGTACGGT CGTCGAAGTT
CGCGTCTTCA ATCGTCATGG CGTGGAGAAA GACGAGCGCG CGATGGCCAT CGAGCGCGAG
GAAATCGAAC GCCTCGCCAA GGACCGCGAC GACGAACAGG CGATCCTGGA TCGTAACGTC
TATGCGCGTC TGGTCGACAT GTTGCGCGGT CACGTGGCGG TTGCCGGTCC GAAGGGCTTT
AAGAAGGGCA CCGAGCTTTC GAATGCCGTG ATCAGCGAAT ATCCCCGCTC GCAGTGGTGG
ATGTTCGCCA TCGAGGACGA AAAGGCGCAG GGCGAGATCG AAGCGCTCCG CGGTCAGTAC
GACGAATCCA AGTCGCGTCT TGAACAGCGC TTCATGGACA AGGTCGAGAA GGTCCAGCGT
GGCGACGAAA TGCCTCCTGG CGTCATGAAG ATGGTCAAGG TCTTCGTCGC TGTGAAGCGC
AAGATCCAGC CGGGCGACAA GATGGCCGGC CGTCACGGCA ACAAGGGTGT CGTGTCGCGC
ATCGTGCCGA TCGAAGACAT GCCGTTCCTG GAGGACGGCA CGCATGTCGA CGTGGTGCTG
AACCCGCTCG GCGTGCCTTC GCGCATGAAT GTCGGCCAGA TTCTCGAGAC CCATCTCGGC
TGGGCTTGCG CCGGCATGGG CAAGAAGATC GGAGCGATGC TCGATGCGTA TAAGGCGGGC
GCTGACATTC AGCCGCTGCG CGACACCATC GACAGCGTCA TCGGATCCGG TCCGAAGGGC
GAGCCGATCA AGCAGTACGA CGATGAGTCG ATCGTACGGC TGGCCGAGCA GACCCGTCGC
GGCGTATCGA TCGCAACGCC GGTCTTCGAC GGTGCAGTCG AGGCCGACGT CAACGAGATG
CTCGAGCAGG CCGGCCTCAA GGTAACCGGC CAGTCGACGC TCTATGACGG CCGTACCGGC
GAGACGTTCG ACCGTCAGGT GACCGTGGGC TACATCTACA TGCTGAAGCT CAACCACCTG
GTCGACGACA AGATCCACGC CCGTTCGATC GGACCGTATT CGCTCGTTAC CCAGCAGCCG
CTGGGCGGCA AGGCGCAGTT CGGCGGTCAG CGCTTCGGCG AGATGGAGGT CTGGGCGCTG
GAAGCCTATG GCGCCGCCTA CACGCTGCAG GAGATGCTGA CGGTCAAGTC GGATGACGTG
GCCGGCCGCA CCAAGGTCTA TGAAGCTATC GTCCGTGGCG ACGACACCTT CGAAGCGGGC
ATTCCGGAGA GCTTCAACGT TCTCGTCAAG GAAATGCGCT CGCTGGGCCT TTCGGTCGAG
CTGGAAAACT CCAAGGTCGA CGAAGTCGGT GCCAGTGCGC AGCTGCCTGA CGCGGCCGAA
TAA
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| Protein sequence | MAQTLSFNGR RRVRKFFGKI PEVAEMPNLI EVQKASYDQF LMVDEPQGGR PDEGLQAVFK
SVFPIKDFSG ASMLEFVSYE FEAPKFDVEE CRQRDLTYAA PLKVTLRLIV FDIDEDTGAK
SIKDIKEQNV YMGDMPLMTD NGTFIVNGTE RVIVSQMHRS PGVFFDHDKG KSHSSGKLLF
AARVIPYRGS WLDIEFDAKD IVHARIDRRR KIPVTSLLMA LGMDGEEILD TFYTKSLYQR
DGEGWRVPFQ PDALKGQKAL ADLIDADTGE VVVEGGKKLT PRLLRQLQDK GLKALKATDD
DLYGNYLAED VVNFETGEIY LEAGDEIDEK TLPVILSAGF DEIPVLDIDH INIGAYIRNT
LAADKNENRQ DALFDIYRVM RPGEPPTMDS AEAMFNALFF DAERYDLSAV GRVKMNMRLD
LDVPDTVRTL RKEDILAVVK MLVELRDGKG EIDDIDNLGN RRVRSVGELM ENQYRLGLLR
MERAIKERMS SIEIDTVMPQ DLINAKPAAA AVREFFGSSQ LSQFMDQVNP LSEITHKRRL
SALGPGGLTR ERAGFEVRDV HPTHYGRICP IETPEGPNIG LINSLATFAR VNKYGFIESP
YRKIVDGKVT SDVVYLSAME EAKYHVAQAN SVLDEDGSFS EEFVVCRHAG EVMLAPRDNI
NLMDVSPKQL VSVAAALIPF LENDDANRAL MGSNMQRQAV PLLRAEAPFV GTGMEPVVAR
DSGAAIAARR GGIVDQVDAT RIVIRATEDL DPSKSGVDIY RLQKFQRSNQ NTCVNQRPLV
TVGDVLNKGD IIADGPSTDL GDLALGRNAL VAFMPWNGYN YEDSILLSER IVRDDVFTSI
HIEEFEVMAR DTKLGPEEIT RDIPNVSEEA LKNLDEAGIV YIGAEVQPGD ILVGKITPKG
ESPMTPEEKL LRAIFGEKAS DVRDTSMRMP PGTFGTVVEV RVFNRHGVEK DERAMAIERE
EIERLAKDRD DEQAILDRNV YARLVDMLRG HVAVAGPKGF KKGTELSNAV ISEYPRSQWW
MFAIEDEKAQ GEIEALRGQY DESKSRLEQR FMDKVEKVQR GDEMPPGVMK MVKVFVAVKR
KIQPGDKMAG RHGNKGVVSR IVPIEDMPFL EDGTHVDVVL NPLGVPSRMN VGQILETHLG
WACAGMGKKI GAMLDAYKAG ADIQPLRDTI DSVIGSGPKG EPIKQYDDES IVRLAEQTRR
GVSIATPVFD GAVEADVNEM LEQAGLKVTG QSTLYDGRTG ETFDRQVTVG YIYMLKLNHL
VDDKIHARSI GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYTLQ EMLTVKSDDV
AGRTKVYEAI VRGDDTFEAG IPESFNVLVK EMRSLGLSVE LENSKVDEVG ASAQLPDAAE
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