Gene Smed_0961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0961 
Symbol 
ID5321802 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp1039191 
End bp1040219 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content62% 
IMG OID640789899 
Productpeptide chain release factor 2 
Protein accessionYP_001326649 
Protein GI150396182 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1186] Protein chain release factor B 
TIGRFAM ID[TIGR00020] peptide chain release factor 2 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.379105 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.00626958 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAACAACA AGGCCGAAGA CCCGTCGCTC TGGAACGACG CGGCAGAGGC ACAGAAACTG 
ATGCGGGAGC GCCAGCAGCT CGACGATGGC ATCAGTGGCC TGCGTCGGTT CGAGCAGCAG
CTCAACGACA ACATCGAGCT CATCGAACTC GGCGAAGAGG AAGGCGATTC GGCAATCGTC
TCGGAGGCCG AGGAAGCGCT CCGCCAACTG CGCAACGACG CAGCTAAAAA GCAGGTGGAG
GCCATGCTCT CCGGGGAGGC CGACCAGAAC GATACCTATG TCGAAGTCCA TTCGGGCGCC
GGTGGCACGG AAAGCCAGGA CTGGGCCAAC ATGCTGCTTC GCATGTATAC GCGATGGGCC
GAGCGCCAGG GCTACAAGGT CGAGCTCATG GAAATCCAGG ATGGGGAAGA GGCCGGCATC
AAGTCCGCAA CGCTCCTGGT CAAGGGCCAC AATGCCTATG GCTGGCTGAA GACGGAATCG
GGCGTGCACC GGCTGGTCCG CATTTCCCCC TATGACAGCA ATGCGCGCCG TCATACGTCC
TTCTCGTCCA TCTGGGTCTA TCCCGTGGTG GACGAATCGA TCCAGGTCGA CATCAATGAA
AGCGATTGCA GGATCGATAC CTACCGCTCC TCCGGCGCCG GCGGTCAGCA CGTCAACACG
ACCGATTCGG CCGTGCGCAT CACGCATATG CCGAGCGGCA TCGTGGTGCA GTGCCAGCAG
GAACGCTCAC AGCATAAGAA CCGCGCCAAG GCATGGGACA TGCTCCGTGC GCGGCTTTAC
GAGGCCGAAC TGAAGAAGCG CGAGGAGGCG GCCAACGCCG AGGCGGCATC GAAGACCGAG
ATCGGCTGGG GTCACCAGAT CCGCTCCTAC GTCCTGCAGC CCTACCAGCT CGTGAAGGAC
TTGAGGACAG GCGTCGAAAG CACAAGCCCG GGCGACGTGC TGGACGGTGA ACTGAGCGAG
TTCATGGAGG CAGCCCTTGC GCATCGCGTA AGCGGTGGGG CGGATGCGGC GGTCGACGAT
TTGAGTTGA
 
Protein sequence
MNNKAEDPSL WNDAAEAQKL MRERQQLDDG ISGLRRFEQQ LNDNIELIEL GEEEGDSAIV 
SEAEEALRQL RNDAAKKQVE AMLSGEADQN DTYVEVHSGA GGTESQDWAN MLLRMYTRWA
ERQGYKVELM EIQDGEEAGI KSATLLVKGH NAYGWLKTES GVHRLVRISP YDSNARRHTS
FSSIWVYPVV DESIQVDINE SDCRIDTYRS SGAGGQHVNT TDSAVRITHM PSGIVVQCQQ
ERSQHKNRAK AWDMLRARLY EAELKKREEA ANAEAASKTE IGWGHQIRSY VLQPYQLVKD
LRTGVESTSP GDVLDGELSE FMEAALAHRV SGGADAAVDD LS