| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0960 |
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| Symbol | |
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| ID | 5321801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 1036481 |
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| End bp | 1038934 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640789898 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001326648 |
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| Protein GI | 150396181 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0340726 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGAC TGATTGGATA TTTTTTCGGC ATTGGTGCGT TTCTGCTGCT TGGCGCTGCC
GCGGCCGTCG CCGTTTATCT CGGCGCCGTA ACGAAGGACC TGCCGGATTA CGAGGTGCTG
GCCAATTATT CGCCTCCGGT GACGACGCGC TTTCATGCCG GCAACGGTGC ATTGATGGCC
GAATATGCAC GTGAGCGCCG CTTGTATCTG CCGATCCAGG CGATACCCGA TCGCGTCAAG
GCTGCATTCA TCTCGGCGGA GGACAAGAAT TTCTACCGGC ATCCCGGCAT CGACGTGACC
GGTCTGGCGC GCGCCATTGC CGTCAATCTG CAGAATCTCG GCTCCGGCCG GCGCCCGGTC
GGTGCATCGA CGATTACCCA GCAGGTCGCC AAGAACTTCC TTCTGAGTTC CGACCAGACA
TATGAGCGCA AGATCAAGGA AGCGATCCTC TCCTTCCGCA TCGAACAGGC CTACAGCAAG
GACCGGATTC TCGAACTTTA TCTCAACGAG ATTTTCTTCG GCCTCAATTC CTACGGCATA
GCAGGGGCGG CGCTGACCTA TTTCGACAAG TCCGTAACCG AACTGACGAT AGCCGAGACC
GCCTATCTGG CGGCCCTGCC CAAGGGACCG GCCAATTATC ACCCGTACCG TAACGTCGAG
GCTGCGATCG AGCGTCGCAA CTGGGTCATA GATCGCATGG TCGAAAACGG CTATGTCACC
AAGGCCGACG GCGAAGAGGC AAAACAGCAG CCGCTCGGCG TCTCGCCCCG CCGCGGCGGT
GCACACCTTT TTGCTTCCGA CTTCTTTGCC GAGGAGGTGC GTCGGCAGAT CATTCAGAAA
TACGGTGACA AGGCGCTTTA CGAGGGCGGG CTTTCCGTGC GCACGTCTTT GGATCCACGG
CTGCAGATCT CGGCACGCAA GGCGTTGCAG GCCGGGCTTT TGAGCTATGA CGAGCGGCGT
GGCTTTCACG GTCCTGTAAA AACGATCGAG ATCGGCGGCG ACTGGGGAGA GCCGCTGAGC
AAGATTCCGA GGCTCAGCGA CGTGCCGGAA TGGAAACTGG CGGTTGTCCT TTCGGTGGAT
AGCGAAGGCG CCGAAATCGG TATCCAGCCG GACAAGGAGG CCTCGGGCAA GATCGTGGCG
GAACGGGTGA CCGGGCGTAT CGCGGCGAAG AACATGCAGT GGGCCTATCG CTCCGCAGGC
GGAAAGCGCA AGACCGCAAA ATCGCCGGAA GGGGTCGTCG GACCGGGCGA CGTTATCTAT
GTCGAGCCGT TGGAAGAGGC GAGCGAGTAT CGGCTGCGCC AGCCGCCGAA AGTGCAGGGT
GGGCTGGTCG CAATGGATCC GCATACCGGC CGCGTGCTGG CTATGGTCGG CGGGTTCTCC
TATGGGCAAT CCGAATTCAA CCGTGCAACC CAGGCAATGC GCCAGCCCGG CTCCGCTTTC
AAGCCCTTCG TCTACGCTGC GGCCCTCGAC AACGGCTATA CGCCGGCATC GGTCATTCTG
GATGCGCCGA TCGAGATCGT TGCCGGCGGC CAGGTCTGGC GGCCCGAGAA CTATGGCGGC
GGTTCTGCCG GACCTTCGAC GTTGCGTCTC GGCATCGAGA AATCGCGTAA CCTGATGACG
GTACGGCTCG CCAACGACCT GGGGATGAAC ATCGTCGCCG AATATGCCGA ACGTTTCGGG
ATCTACGACA AGATGGCGCC GCTTCTTGCA ATGTCGCTCG GCTCCGGCGA AACGACCGTT
CTGCGTCTCG TCTCCGCCTA TGCCGTCATC GCCAATGGCG GCAAGCAGAT CAAGCCGTCG
CTGATCGACC GCATCCAGGA TCGCTACGGC AAAACCATTT TCCGCCACGA GGATCGCGCT
TGCGAAAACT GCAATGCCGG CGACTGGGCG GAGCAGGAAG AGCCGGAGCT GATCGACAAG
CGCGAACAGG TCCTCGATCC GATGACCTCC TATCAGATCA CCTCCATGAT GGAAGGCGTG
GTCGCACGCG GGACGGCAGC GGGCAAGATC AAGCTGGACC GTCCCGTCGC GGGCAAGACC
GGCACCACCA ATGACGAGAA GGACGCCTGG TTCGTGGGCT ATACGCCGGA TCTCGTTGCG
GGGCTCTATC TCGGATTCGA CGAACCGGCT CCGCTCGGTC GCGGAGCGAC GGGCGGGGGC
CTGGCAGCGC CGATCTTCAA CACCTTCATG CAGAACGCCG TGGAGGGGAC GCGTCCCGGC
AAATTCGTGG TTCCCGAAGG CATGAGCCTC ATTCCCGTCA ACCGTAAGAC CGGCATGGCG
GCCGTCGAGG GCGAGCCGGA TACGATTATC GAAGCCTTCA AGCCGGGCAC CGGCCCTGCG
GACACCTTCT CCGTCATTGG CGACCTGGAC GAGTATGCAC CGCCGGAAGA GATATTGAGG
AGCTCTCCGC AGGCCAACCA GGCCGTAACC TCCGGCTCCA ACGGCCTGTT CTGA
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| Protein sequence | MIRLIGYFFG IGAFLLLGAA AAVAVYLGAV TKDLPDYEVL ANYSPPVTTR FHAGNGALMA
EYARERRLYL PIQAIPDRVK AAFISAEDKN FYRHPGIDVT GLARAIAVNL QNLGSGRRPV
GASTITQQVA KNFLLSSDQT YERKIKEAIL SFRIEQAYSK DRILELYLNE IFFGLNSYGI
AGAALTYFDK SVTELTIAET AYLAALPKGP ANYHPYRNVE AAIERRNWVI DRMVENGYVT
KADGEEAKQQ PLGVSPRRGG AHLFASDFFA EEVRRQIIQK YGDKALYEGG LSVRTSLDPR
LQISARKALQ AGLLSYDERR GFHGPVKTIE IGGDWGEPLS KIPRLSDVPE WKLAVVLSVD
SEGAEIGIQP DKEASGKIVA ERVTGRIAAK NMQWAYRSAG GKRKTAKSPE GVVGPGDVIY
VEPLEEASEY RLRQPPKVQG GLVAMDPHTG RVLAMVGGFS YGQSEFNRAT QAMRQPGSAF
KPFVYAAALD NGYTPASVIL DAPIEIVAGG QVWRPENYGG GSAGPSTLRL GIEKSRNLMT
VRLANDLGMN IVAEYAERFG IYDKMAPLLA MSLGSGETTV LRLVSAYAVI ANGGKQIKPS
LIDRIQDRYG KTIFRHEDRA CENCNAGDWA EQEEPELIDK REQVLDPMTS YQITSMMEGV
VARGTAAGKI KLDRPVAGKT GTTNDEKDAW FVGYTPDLVA GLYLGFDEPA PLGRGATGGG
LAAPIFNTFM QNAVEGTRPG KFVVPEGMSL IPVNRKTGMA AVEGEPDTII EAFKPGTGPA
DTFSVIGDLD EYAPPEEILR SSPQANQAVT SGSNGLF
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