| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0932 |
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| Symbol | |
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| ID | 5321773 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 1007892 |
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| End bp | 1010636 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789872 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001326622 |
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| Protein GI | 150396155 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.231933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.891499 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTGGC GTCGGTATTG GCGCGCATGG TCGCCAAAGC AATTGTTTCA GAGAATGTCG
ATGAATGTTG TAGTGGTGGA ATCGCCTTCC AAGGCCAAGA CGATCAACAA GTACCTGGGC
CCCGGCTACA AGGTGCTTGC CTCGTTCGGC CACGTGCGTG ACCTGCCTGC CAAGGACGGA
TCGGTTCGCC CCGACGAAGA CTTCGAGATG TCCTGGGAGG TCGACGGCGC TTCCGCAAAG
CGGATGAAAG ACATCGCGGA CGCGGTGAAA GCGTCCGACG GTCTCATTCT GGCAACCGAC
CCCGACCGCG AGGGCGAGGC GATCTCCTGG CATGTGCTCG ACCTTCTCAG AAAAAAGAAG
GTTCTCGGCG ACAAGCCGGT CAAGCGCGTC GTCTTCAATG CGATCACAAA AAAGGCCGTG
CTCGATGCGA TGGCTCAACC TCGCGACATC GATGCCTCGC TGGTCGACGC ATATCTCGCC
CGCCGCGCCC TCGACTACCT GGTCGGCTTC AACCTTTCGC CCGTGCTCTG GCGCAAGCTG
CCGGGCGCGC GCTCGGCGGG CCGCGTGCAG TCGGTGGCGC TGCGCCTCGT CTGCGACCGC
GAATCGGAAA TCGAGCGCTT CGTCACCGAA GAATACTGGA ATATTTCGGC ACTTCTGAAG
ACGCCCCGCG GTGACGAATT CGAAGCGCGC CTCGTTTCGG CGGACGGCAA GCGGCTACCG
GCAAAGGCAA TCGGCAACGG CGAGGAAGCC AACCGGTTGA AGACCCTGCT CGACGGCGCA
AGCTACGTGG TCGAGAGCGT CGAGGCCAAG CCGGTCAAAC GCAACCCCTC GCCCCCCTTC
ACGACTTCGA CGCTGCAGCA GGCGGCCTCC TCCAAGCTCG GCTTCTCGGC TTCGCGCACC
ATGCAGGTGG CGCAGAAGCT CTACGAAGGC ATCGATATCG GCGGCGAGAC GGTCGGCCTC
ATTACCTATA TGCGTACTGA CGGCGTGCAG ATGGCGCCGG AGGCGATCGA CGCCGCACGC
CAGGCGATCG GCAGCCAGTT CGGCGAACGT TATCTGCCTG AAAAGCCGCG TTTCTATTCG
ACCAAGGCAA AAAATGCCCA GGAAGCGCAC GAGGCCATTC GCCCCACCGA TTTCAACCGT
ACCCCCGACC AGGTCCGCCG CTTCCTCGAT GGCGACATGC TGAGGCTCTA CGACCTCGTC
TGGAAGCGCG GTATAGCGAG CCAGATGGCG TCCGCGGAGA TAGAGCGCAC CACCGCCGAG
ATTGTCGCCG ACAATGCTGG CAAGAGAGCA GGTCTCAGGG CAACCGGCTC GGTCATCCGC
TTCGACGGTT TCATCGCGGC CTATACCGAC ATGAAGGAAG ACGGCGAACA GACGGATGAT
GGCGACGAAG ACGGCCGCCT TCCGGAAATC AACGCGCGTG AAAACCTCGC CAAGCAGAAG
ATCAACGCAA GCCAGCACTT CACCGAACCC CCGCCGCGTT ATTCGGAAGC GACGCTCATC
AAGAAAATGG AAGAGCTCGG TATCGGTCGC CCCTCCACCT ACGCGGCGAC CGTCACGACG
CTTATCGACC GCGATTACGT GGAGATCGAC AAGCGCAAGC TGTTGCCGCA GGCCAAGGGC
CGCCTTGTCA CGGCATTTCT CGAGAGCTTC TTTACCCGCT ACGTCGAATA CGATTTTACC
GCATCGCTCG AAGAAAAGCT GGATCGGATT TCGGCCGGCG AACTCAACTG GAAGGACGTA
CTGCGCGACT TCTGGAAGGA CTTCTTCTCC CAGATCGAAG ACACCAAGGA ACTGCGCGTC
ACCAATGTGC TCGATGCGCT CAACGAGGAA CTGGCTCCGC TCGTCTTTCC GAAGCGGGAA
GATGGTGGCG ATCCGCGCAT CTGTCAGGTC TGCGGCACCG GCAAACTCTC CTTGAAGCTC
GGTAAATACG GCGCCTTCGT CGGGTGCTCG AACTATCCGG AATGCAACTA TACACGCCAG
CTTTCCTCTG ACAGCAGCGG TGACGCGGAA GCAGCCGCCT CGAACGAGCC CCAAAGCCTC
GGCAAGGACC CGCATACCGG CGAGGAAATC ACGCTGCGCA ACGGCCGCTT CGGCCCCTAT
GTCCAGCGCG GCGACGGCAA GGAGGCGAAA CGCGCCAGTC TGCCGAAGGG CTGGACGCCG
GCAACGATCG ATCACGAAAA GGCGCTTGCC CTTCTCTCCC TGCCACGCGA CCTCGGTCCG
CATCCGGAAA CCGGCAAGAT GATCTCCGCC GGGATCGGCC GCTATGGCCC CTTCGTACTC
CACAACGGAA CCTATGCCAA TCTGGAGTCG GTCGAGGACG TCTTCTCGAT CGGTCTCAAC
CGCGCGACTT CCGTCCTGGC CGACAAGCAG TCCAAGGGCG CCGGCGGTGC GGGCGGCCGC
ACCGGCGCGG CAGCCGTGAA GGAACTTGGG GAACATCCTG ACGGCGGGGC GATTACTGTT
CGCGACGGCC GCTACGGACC CTATGTCAAC TGGGGCAAGG TGAATGCCAC CCTGCCTCGG
GGCAAGGACC CGCAATCGGT CACGGTCGAG GAAGCGCTTG CGTTCATCGC CGAGCGAGCA
GCGAAAGGCG GCGTGACGAA AGGCAAGACG GCCAAGGGGA AGTCGGCCGG GAGAAAACAA
GCCGGAACGA AGACTGCCAA GGCGGCCGGA ACTGCGACAG CTGAGAAGCC GAAACGCGCA
GCAAAGACGA AAACGAAGTC GGCCGCGAAG GCCAAGAAGG ACTGA
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| Protein sequence | MSWRRYWRAW SPKQLFQRMS MNVVVVESPS KAKTINKYLG PGYKVLASFG HVRDLPAKDG
SVRPDEDFEM SWEVDGASAK RMKDIADAVK ASDGLILATD PDREGEAISW HVLDLLRKKK
VLGDKPVKRV VFNAITKKAV LDAMAQPRDI DASLVDAYLA RRALDYLVGF NLSPVLWRKL
PGARSAGRVQ SVALRLVCDR ESEIERFVTE EYWNISALLK TPRGDEFEAR LVSADGKRLP
AKAIGNGEEA NRLKTLLDGA SYVVESVEAK PVKRNPSPPF TTSTLQQAAS SKLGFSASRT
MQVAQKLYEG IDIGGETVGL ITYMRTDGVQ MAPEAIDAAR QAIGSQFGER YLPEKPRFYS
TKAKNAQEAH EAIRPTDFNR TPDQVRRFLD GDMLRLYDLV WKRGIASQMA SAEIERTTAE
IVADNAGKRA GLRATGSVIR FDGFIAAYTD MKEDGEQTDD GDEDGRLPEI NARENLAKQK
INASQHFTEP PPRYSEATLI KKMEELGIGR PSTYAATVTT LIDRDYVEID KRKLLPQAKG
RLVTAFLESF FTRYVEYDFT ASLEEKLDRI SAGELNWKDV LRDFWKDFFS QIEDTKELRV
TNVLDALNEE LAPLVFPKRE DGGDPRICQV CGTGKLSLKL GKYGAFVGCS NYPECNYTRQ
LSSDSSGDAE AAASNEPQSL GKDPHTGEEI TLRNGRFGPY VQRGDGKEAK RASLPKGWTP
ATIDHEKALA LLSLPRDLGP HPETGKMISA GIGRYGPFVL HNGTYANLES VEDVFSIGLN
RATSVLADKQ SKGAGGAGGR TGAAAVKELG EHPDGGAITV RDGRYGPYVN WGKVNATLPR
GKDPQSVTVE EALAFIAERA AKGGVTKGKT AKGKSAGRKQ AGTKTAKAAG TATAEKPKRA
AKTKTKSAAK AKKD
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