Gene Smed_0919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0919 
Symbol 
ID5321760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp991351 
End bp992661 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content61% 
IMG OID640789859 
ProductLolC/E family lipoprotein releasing system, transmembrane protein 
Protein accessionYP_001326609 
Protein GI150396142 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4591] ABC-type transport system, involved in lipoprotein release, permease component 
TIGRFAM ID[TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCGG CGACGGACGA GCAAGTGCAG GCTGCCGCTC CATCCAGCAT ACCTTCCGGC 
CGTCCCTTCT CCGCTTTCGA GCGTATGGTC GCCTGGCGCT ACCTGCGTTC GCGGCGGAAG
GAAGCCTTCA TCTCGGTCAT CGCCGGCTTT TCTTTCATCG GGATCATGCT CGGGGTCGGA
ACGCTGATCA TCGTCATGGC GGTGATGAAC GGCTTCAGAA CCGAGCTCAT TTCACGCATT
CTCGGCATGA ACGGCCATAT GATCGTTCAA CCGCTGGATG GACCGCTCAC AAATTACGCC
GATCTCGCCA CCAGGTTTTC CGCCGTTCCC GGCGTCACCA TGGCCATTCC GATCGTCGAG
GGCCAGGTTC TCGCGCAAGG CTTCGGGGAT GCCTCGACGG GTGCGCTCGT TCGCGGAATA
CGCGCTGACG ACCTCACCAA GCTCAAGTCG GTCTCGGAAA AAATCCAGGC GGGCGACCTC
GTCGGTTTCG CTTCGGGCAG CGGCGTCGCC ATCGGCTCGC GCATGGCCGA GCAATTGGGT
ATCCGCGTGG GCGGGACGAT CACGCTCACC TCGCCGAACG GCGACGTGAC GCCGATGGGC
ATGAATCCGA GGGTCAAGGG CTATACCGTT TCGGCCATAT TCGAGATGGG CATGTCGGAA
TACGACGCGA CCATCATCTT CATGCCGCTC GAGGAAGCAC AGCTCTATTT CAACGCCGAG
GGCCTCGTCC AGTCGATCGA GCTTTTCGTC GAGCATCCGG ATGCCGTCGA CACGCTTCGC
GAGCCGGTGG AGAAGGCGGC CGGCCGGCAG ATATTCATCA CCGACTGGCG CGAACGGAAC
AGGACGTTCT TTTCCGCGCT CGAGGTGGAG CGGAACGTCA TGTTCATGAT CCTGACGCTC
ATCGTGCTGG TCGCGGCGCT GAATATCATC TCCGGCCTGA TCATGCTGGT GAAGGATAAG
GGCAGTGACA TCGCGATCCT CAGGACGATG GGGGCGACCT CCGGCTCGGT GATGCGAATC
TTCTTCATGA CCGGCGCAGC CATAGGCGTC ACGGGAACGA TCGCCGGCGT CGTCCTCGGG
GTCGTCGTCT GCCTGAATAT CGAATCGATC CGCCAGTTCT TCTCCTGGGT CTCGGGCGCC
ACGCTTTTCG ATCCGGAGCT TTACTTCCTG AGTCAGCTTC CGGCTGACAT GAATGCCGAC
GAGACTGTCA CCGTCGTCAT CATGGCGCTC GCGCTTTCCT TCCTTGCCAC GATCTTCCCG
GCCTGGCGCG CCTCGCGCCT CGATCCGGTG CAGGCCCTGC GGTACGAATA A
 
Protein sequence
MTAATDEQVQ AAAPSSIPSG RPFSAFERMV AWRYLRSRRK EAFISVIAGF SFIGIMLGVG 
TLIIVMAVMN GFRTELISRI LGMNGHMIVQ PLDGPLTNYA DLATRFSAVP GVTMAIPIVE
GQVLAQGFGD ASTGALVRGI RADDLTKLKS VSEKIQAGDL VGFASGSGVA IGSRMAEQLG
IRVGGTITLT SPNGDVTPMG MNPRVKGYTV SAIFEMGMSE YDATIIFMPL EEAQLYFNAE
GLVQSIELFV EHPDAVDTLR EPVEKAAGRQ IFITDWRERN RTFFSALEVE RNVMFMILTL
IVLVAALNII SGLIMLVKDK GSDIAILRTM GATSGSVMRI FFMTGAAIGV TGTIAGVVLG
VVVCLNIESI RQFFSWVSGA TLFDPELYFL SQLPADMNAD ETVTVVIMAL ALSFLATIFP
AWRASRLDPV QALRYE