Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0919 |
Symbol | |
ID | 5321760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 991351 |
End bp | 992661 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640789859 |
Product | LolC/E family lipoprotein releasing system, transmembrane protein |
Protein accession | YP_001326609 |
Protein GI | 150396142 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCGG CGACGGACGA GCAAGTGCAG GCTGCCGCTC CATCCAGCAT ACCTTCCGGC CGTCCCTTCT CCGCTTTCGA GCGTATGGTC GCCTGGCGCT ACCTGCGTTC GCGGCGGAAG GAAGCCTTCA TCTCGGTCAT CGCCGGCTTT TCTTTCATCG GGATCATGCT CGGGGTCGGA ACGCTGATCA TCGTCATGGC GGTGATGAAC GGCTTCAGAA CCGAGCTCAT TTCACGCATT CTCGGCATGA ACGGCCATAT GATCGTTCAA CCGCTGGATG GACCGCTCAC AAATTACGCC GATCTCGCCA CCAGGTTTTC CGCCGTTCCC GGCGTCACCA TGGCCATTCC GATCGTCGAG GGCCAGGTTC TCGCGCAAGG CTTCGGGGAT GCCTCGACGG GTGCGCTCGT TCGCGGAATA CGCGCTGACG ACCTCACCAA GCTCAAGTCG GTCTCGGAAA AAATCCAGGC GGGCGACCTC GTCGGTTTCG CTTCGGGCAG CGGCGTCGCC ATCGGCTCGC GCATGGCCGA GCAATTGGGT ATCCGCGTGG GCGGGACGAT CACGCTCACC TCGCCGAACG GCGACGTGAC GCCGATGGGC ATGAATCCGA GGGTCAAGGG CTATACCGTT TCGGCCATAT TCGAGATGGG CATGTCGGAA TACGACGCGA CCATCATCTT CATGCCGCTC GAGGAAGCAC AGCTCTATTT CAACGCCGAG GGCCTCGTCC AGTCGATCGA GCTTTTCGTC GAGCATCCGG ATGCCGTCGA CACGCTTCGC GAGCCGGTGG AGAAGGCGGC CGGCCGGCAG ATATTCATCA CCGACTGGCG CGAACGGAAC AGGACGTTCT TTTCCGCGCT CGAGGTGGAG CGGAACGTCA TGTTCATGAT CCTGACGCTC ATCGTGCTGG TCGCGGCGCT GAATATCATC TCCGGCCTGA TCATGCTGGT GAAGGATAAG GGCAGTGACA TCGCGATCCT CAGGACGATG GGGGCGACCT CCGGCTCGGT GATGCGAATC TTCTTCATGA CCGGCGCAGC CATAGGCGTC ACGGGAACGA TCGCCGGCGT CGTCCTCGGG GTCGTCGTCT GCCTGAATAT CGAATCGATC CGCCAGTTCT TCTCCTGGGT CTCGGGCGCC ACGCTTTTCG ATCCGGAGCT TTACTTCCTG AGTCAGCTTC CGGCTGACAT GAATGCCGAC GAGACTGTCA CCGTCGTCAT CATGGCGCTC GCGCTTTCCT TCCTTGCCAC GATCTTCCCG GCCTGGCGCG CCTCGCGCCT CGATCCGGTG CAGGCCCTGC GGTACGAATA A
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Protein sequence | MTAATDEQVQ AAAPSSIPSG RPFSAFERMV AWRYLRSRRK EAFISVIAGF SFIGIMLGVG TLIIVMAVMN GFRTELISRI LGMNGHMIVQ PLDGPLTNYA DLATRFSAVP GVTMAIPIVE GQVLAQGFGD ASTGALVRGI RADDLTKLKS VSEKIQAGDL VGFASGSGVA IGSRMAEQLG IRVGGTITLT SPNGDVTPMG MNPRVKGYTV SAIFEMGMSE YDATIIFMPL EEAQLYFNAE GLVQSIELFV EHPDAVDTLR EPVEKAAGRQ IFITDWRERN RTFFSALEVE RNVMFMILTL IVLVAALNII SGLIMLVKDK GSDIAILRTM GATSGSVMRI FFMTGAAIGV TGTIAGVVLG VVVCLNIESI RQFFSWVSGA TLFDPELYFL SQLPADMNAD ETVTVVIMAL ALSFLATIFP AWRASRLDPV QALRYE
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