Gene Smed_0880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0880 
Symbol 
ID5321718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp944588 
End bp944986 
Gene Length399 bp 
Protein Length132 aa 
Translation table11 
GC content68% 
IMG OID640789817 
Productcupin 2 domain-containing protein 
Protein accessionYP_001326570 
Protein GI150396103 
COG category[S] Function unknown 
COG ID[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.592364 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATCT TCGAGTGCGG ATCGAGACCC TCGACGCGCG GGCCCGCCGA ATACTTCACC 
GGATCCGTAC GCCTGGACCC TGCCTTCGAG GCGCCGTCAC CCGCACGGCT ACGCGGCGCA
ACCGTGACCT TCGAGCCCGG CGCGCGCACC GCCTGGCACA CCCACCCGCT CGGCCAGACC
CTGATCGTCA CCGCCGGCCG CGGCCTCGCC CAAAGCTGGG GCGGAGAACT GCGCGAGATC
CGCGCCGGCG ACGTGGTGTG GTTCCCGCCG GGTGAAAAGC ACTGGCATGG GGCAGCGCCC
GATACGGGGA TGACCCATAT CGCCATTCAG GAAGCGCTCG ATGGAAAGGC GGTGGACTGG
CTCGAGCATG TGACGGACGA GCAGTATGGG GGTGTGTAG
 
Protein sequence
MEIFECGSRP STRGPAEYFT GSVRLDPAFE APSPARLRGA TVTFEPGART AWHTHPLGQT 
LIVTAGRGLA QSWGGELREI RAGDVVWFPP GEKHWHGAAP DTGMTHIAIQ EALDGKAVDW
LEHVTDEQYG GV