| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0818 |
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| Symbol | |
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| ID | 5321655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 881361 |
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| End bp | 882557 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789755 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001326509 |
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| Protein GI | 150396042 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.115621 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.507066 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAGC CGGCGCACGA AGACGAGCGG TTCATGGCGG CGGCGCTGCG CCTTTCGAGG
CGCAATCTTG GTCGGACTGG CACCAATCCC TCTGTCGGCT GCGTGATCGT AAACGAGGGA
ATGATTGTTG GCCGCGCGGT GACGGCGTCC GGCGGGCGAC CGCATGCCGA GACGCAGGCG
CTTGCCGAGG CGGGCGAGAA GGCGAGGGGA GCGACGGCAT ATGTCACGCT CGAACCCTGT
TCGCATCACG GCAAGACCCC GCCCTGCACG GATGCGCTGA TTGCTTCCGG AGTCGCTCGT
GTCGTGGTCG CCATCCTCGA CCCCGACGAA CGCGTTGCCG GTCGCGGCAT TGTGCTGCTT
CGCGAAGCGG GAATAGCGGT CGATATCGGC GTCCTCCGCG AGGAGGGCGA GCGTGCGCTC
CAGGCATACC TTATGCGGCA GTGCAAGAAG CGCCCGCATG TGACTCTGAA GCTTGCGGTT
TCCAACGATG GCATGATCGG TCGAAGGGGC GAAGGGCAGG TAAGGATTAC CGGCGCGGTT
TCCCGCGCTC AGGTACAGAT ATTGCGTGCC GAAACCGACG CGATCCTCGT CGGCATCGGC
ACGGCGAGCG CTGACGATCC GGAACTTACG GTGCGCATGC AGGGGCTTGA AGACCGATCG
CCCGTGCGGA TCGTGCTTGA CCGCCGGCTT GAGTTGCCGA TCGAGTCGAA ACTGGTGCGG
TCGGCTGGCG AAGTTTCGTT GATCGTCGTT GCGGGTGATG CAGGCTCACC TTCTCCGCGC
ATGCGGGTAG AAGGTGAGCG AAGGGCGGAT GAGGGGCAGG TAAGCGGCGT GTCATTGCCC
CTCACCCCGA CCCTCTCTCC GGTTGCCGGG AGAGGGGGCG ACTACGAAGC CCGCCGGGAT
GTGCTCGTAT CGGCCGGTGT GGAAATCCTG AACGCTGACA ACATCCCGGA TCTGCTGGCT
GCGCTTGCCT CGCGCGGCAT CTCCTCTCTT CTCGTCGAAG GTGGGAGCAG CGCGGCGCGC
GCCTTTCTCG ATGTGGAGCT GGTCGATCGT ATCTTGCTCT TCACCGGCCC GTCTCCCATT
GGCAAAGGTG GCATACCATC CCCATTTCAG CGAAGGTCCG TACCGGCGGG CTTCACGCTC
CAGCGTACCG CACGTTACGG CGACGATATT TTTGAAGAGT ATGAGAGAGA TATCTGA
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| Protein sequence | MVKPAHEDER FMAAALRLSR RNLGRTGTNP SVGCVIVNEG MIVGRAVTAS GGRPHAETQA
LAEAGEKARG ATAYVTLEPC SHHGKTPPCT DALIASGVAR VVVAILDPDE RVAGRGIVLL
REAGIAVDIG VLREEGERAL QAYLMRQCKK RPHVTLKLAV SNDGMIGRRG EGQVRITGAV
SRAQVQILRA ETDAILVGIG TASADDPELT VRMQGLEDRS PVRIVLDRRL ELPIESKLVR
SAGEVSLIVV AGDAGSPSPR MRVEGERRAD EGQVSGVSLP LTPTLSPVAG RGGDYEARRD
VLVSAGVEIL NADNIPDLLA ALASRGISSL LVEGGSSAAR AFLDVELVDR ILLFTGPSPI
GKGGIPSPFQ RRSVPAGFTL QRTARYGDDI FEEYERDI
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