Gene Smed_0817 details

Gene Information

• Locus tag: Smed_0817
• Symbol: nrdR
• ID: 5321654
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 880871
• End bp: 881344
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 640789754
• Product: transcriptional regulator NrdR
• Protein accession: YP_001326508
• Protein GI: 150396041
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.218804
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.43356
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCTGCC CCTATTGCGG TTCCGAAGAC AGTCAGGTGA AGGATTCCCG TCCGGCGGAG 
GACGGGAACG CCATTCGCCG CCGCCGCATC TGCCCGGATT GCGGCGGCCG CTTCACGACC 
TTCGAGCGGG TGCAACTGCG GGAGCTGATG ATCATCAAGA AAACCGGCCG GAAGGTTCCT 
TTCGACCGGG ACAAACTGTT GCGCTCCTTT GAGATCGCGC TTCGAAAGCG CCCGGTCGAT 
CGTGACCGGA TCGAGCGGGC GGTCTCAGGC ATCGTCCGCC GGCTGGAAAG CTCCGGCGAA 
ACCGAAATTC CGTCGGAAGA AATAGGCCTT CAGGTTCTCG AGGCGCTGAA GAGCCTCGAC 
GACGTCGCCT TCGTACGCTA CGCGTCGGTC TATCGCGATT TCTCCCACGC GGAGGATTTC 
GAGAAGGTCA TCGCGGAAAT CAGCGCAAAG ATCGCACGCG ATCCTGGCGA GTAG 

 

Protein sequence

MRCPYCGSED SQVKDSRPAE DGNAIRRRRI CPDCGGRFTT FERVQLRELM IIKKTGRKVP 
FDRDKLLRSF EIALRKRPVD RDRIERAVSG IVRRLESSGE TEIPSEEIGL QVLEALKSLD 
DVAFVRYASV YRDFSHAEDF EKVIAEISAK IARDPGE