Gene Smed_0802 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0802 
SymbolaspS 
ID5321639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp863504 
End bp865291 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content62% 
IMG OID640789739 
Productaspartyl-tRNA synthetase 
Protein accessionYP_001326493 
Protein GI150396026 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0173] Aspartyl-tRNA synthetase 
TIGRFAM ID[TIGR00459] aspartyl-tRNA synthetase, bacterial type 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.336028 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCGTT ACCGCAGCCA CACCTGTGCC GCCCTCCGCA AGTCGGATGT CGGCTCCACC 
GTTCGCCTTT CCGGCTGGGT TCACCGCGTC CGCGATCACG GCGGCGTGCT CTTCATCGAT
TTGCGCGACC ATTATGGCAT GACCCAGGTC GTCGCCGATC CGGATTCGCC GGCCTTCAAA
GCGGCCGAGA CGGTGCGCGG CGAATGGGTC ATTCGCGTCG ACGGTGCCGT CAAGGCGCGC
ACCGACGAGA CGGTCAACCG GAACATGCCT ACGGGTGAGG TCGAGCTTTA TGCCCGCGAG
ATCGAGGTGC TCTCGGCCGC CAAGGAACTG CCGCTGCCGG TTTTCGGCGA GCCGGACTAT
CCCGAAGACG TGCGCCTGAA ATACCGCTTC CTCGATCTGC GCCGCGAGAC GCTGCACAAG
AACATCGTCA GGCGCACCGA AATCATCGCC GCCATGCGGC GCCGGATGAG CGACATAGGC
TTCACCGAAT ATACGACCCC GATCCTGACG GCCTCGTCGC CGGAAGGCGC GCGCGACTTC
CTGGTGCCCA GCCGCATCCA CCCCGGAAAT TTCTATGCGC TGCCGCAGGC CCCTCAGCAG
TACAAGCAGC TCCTGATGGT TGCGGGCTTT GACCGGTACT TCCAGATTGC TCCGTGTTTC
CGCGACGAGG ATCCGCGCGC CGACCGTCTG CCCGGCGAGT TCTATCAGCT CGATCTCGAA
ATGAGCTTCG TCGAACAGGA GGACGTTTGG GACGCCATGG AGCCGATGAT CCGGGCGATC
TTCGCGGATT TCGCCGGAGG CAAGCCGGTG ACGGACAAGT TCCCGCGCAT TCCCTATGAC
GCGGCGATCC GCAAATATGG TTCCGATAAG CCGGACCTGC GCAACCCGAT CGAGATGCAG
GAGGTTACGG AGCATTTCGC CGGTTCCGGC TTCAAGGTCT TCGCCAATAT GATAGCCTCC
AACCCGAAGG TGGAGATCTG GGCCATTCCC GCCAAGACCG GCGGCTCTCG CGCTTTCTGC
GACCGTATGA ACGCCTGGGC TCAAAGCCAG GGTCAGCCGG GCCTCGGATA TATATTCTGG
CGCAAGGAAG GCGAGAAGCT CGAAGGTGCC GGTCCGCTCG CCAAGAATAT CGGCGAGGAG
CGGACCGACG CCATCCGCAC GCAACTCGGT CTCGGGGACG GCGACGCCTG CTTCTTCGTT
GCCGGGGAAC CGGCGAAATT CTACAAGTTC GCCGGCGAAG CCCGCACAAG GGCAGGCGAG
GAATTGAACC TCGTCGACCG TGAGCGTTAC GAGCTGTGCT GGATCGTGGA CTTCCCGTTC
TATGAATGGA ACGAGGAGGA AAAGCGCGTC GATTTCGCCC ACAACCCGTT CTCGATGCCG
CAGGGTGGCC TCACTGCTCT TTCGAGCGAC GATCTCCTGT CGATCAAGGC TTTCCAGTAC
GACATGGTGT GCAACGGCTT CGAGATCGCC TCGGGTTCGA TCCGTAACCA GTCGCCGGAA
CTCATGGTGA AGGCTTTCGA GAATGTCGGG CTCAGCCAGG CTGACGTGGA AGAGCGGTTC
GGTGGTCTCT ACCGCGCGTT CCAATATGGT GCCCCGCCGC ATGGCGGCAT GGCTTTCGGC
ATCGATCGCA TCGTCATGCT GCTGGTCGGC GCCAAGAATT TGCGCGAAAT CTCTCTGTTT
CCGATGAACC AGCAGGCTCA GGACCTGCTG ATGGGGGCCC CTTCGCCGGC GGAGCCGGCG
CAGCTCAGGG AACTGGCGAT CCGACCGGTA CCGCAGAAGA AGGATTGA
 
Protein sequence
MHRYRSHTCA ALRKSDVGST VRLSGWVHRV RDHGGVLFID LRDHYGMTQV VADPDSPAFK 
AAETVRGEWV IRVDGAVKAR TDETVNRNMP TGEVELYARE IEVLSAAKEL PLPVFGEPDY
PEDVRLKYRF LDLRRETLHK NIVRRTEIIA AMRRRMSDIG FTEYTTPILT ASSPEGARDF
LVPSRIHPGN FYALPQAPQQ YKQLLMVAGF DRYFQIAPCF RDEDPRADRL PGEFYQLDLE
MSFVEQEDVW DAMEPMIRAI FADFAGGKPV TDKFPRIPYD AAIRKYGSDK PDLRNPIEMQ
EVTEHFAGSG FKVFANMIAS NPKVEIWAIP AKTGGSRAFC DRMNAWAQSQ GQPGLGYIFW
RKEGEKLEGA GPLAKNIGEE RTDAIRTQLG LGDGDACFFV AGEPAKFYKF AGEARTRAGE
ELNLVDRERY ELCWIVDFPF YEWNEEEKRV DFAHNPFSMP QGGLTALSSD DLLSIKAFQY
DMVCNGFEIA SGSIRNQSPE LMVKAFENVG LSQADVEERF GGLYRAFQYG APPHGGMAFG
IDRIVMLLVG AKNLREISLF PMNQQAQDLL MGAPSPAEPA QLRELAIRPV PQKKD