| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0751 |
|---|
| Symbol | |
|---|
| ID | 5321588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 805783 |
|---|
| End bp | 807510 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640789688 |
|---|
| Product | amidohydrolase 3 |
|---|
| Protein accession | YP_001326442 |
|---|
| Protein GI | 150395975 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.696305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCTC TTTACGATCA TCGTCCAAGC CACGCGGCCC GCAGCGCTCA GGCCGACCTC
GTACTCACCA ACGGCCAAAT CTATACAGGG GATCCCGGCC TGCCCTGGTG TCGGGCTCTG
GCGGTCGCGG GTGGGCGTAT CGTAGCGCGC GGCGAGCGCG CGGACATGGA GCATCTGATC
GGTGCTCAGA CCGAAGTCAC GGACCTGGGC GGGCGTTTTG CCATGCCGGG CCTCTACGAT
ATGCACACAC ATCCCGACCT CGCGCTCGCG CCCCGCTATG CCGAGGATCT CGACATCGGT
CTCGTCGATC CGACGCCCGA TCAGGTGCGC AACGCGGTTT TGGCCTACGC CGCCCGATAT
CCCGACCGCG AATGGATCTA CGGGCAGTAT TTCGTGCGTT ATACTTTCCG GCAAGCAGGC
CTCGTTCCCG GGCGGGACTG GCTGGATGCC GTGATGCCCG ATCGGCCGGT CGCGCTTCTC
GACCGCATGT GGGGCACCAT GATGGTCAAC AGCGAGGCCC TTCTTCGCGC TGGCATCAAC
GCCGACACGC CGGATCCCCT CAACGGATAT TTCGAACGCG ACCCGGTAAG CGGCGAGCCG
ACGGGTCTGC TCATCGATGG TGCCTACGCC CTGATCCATG CGGCCATGCC CGCCACACCG
GTCGCGGTAC TGCGCGCGGC CTACCGAGAC GGCATTCGCT ATCAGTCCGC ACGCGGGGTG
GTCGCGACCA AATATGTCCA TGTCTGCGAA AACCGGCTGA ACGCGCTGCA ATCCCTCGAT
CAATCCGGCG AATTGACGCT CCGGGTCGAG GCTGCGATCA GTTGGCAGGA CGACATCTTT
CCCGTGCGCC GCCGCTGGGA GCTGCTCGCG GGGGAGCGCC ACTATTACCG TTCCGCCCGG
CTCGACGCCA GTGCCGTGAA ATTCCACTTC GACGGCACGG TCGAACCGCG CTCGTCCTAT
CTCATGACGC CATGGGACGG CGCAAACAGT GCCTGGCGCG GCAAGCTCAA CCTGACGCCG
GAGCATCTCG CCGATATGAT CTGGGACATG GACCGCCAGG GCATCCGGGT GATCGCCCAT
TGCACGGGCG ACGCGGCTTC CGACACGTTT CTGGACGCGG TAGAGGCAGC GCGCCGGCGA
CCGGGTGGAC TCGGCGTGCG ACATCAATGC GCGCATTCCA CTATCCTGCA CGGCAGCAAC
CTCAAGCGGT TTCGCGATCT CAACGTCACC GCGGAGTTTT CGCCGGTCGC ATGGTATCCA
TCGAAGTTCG TTTCCGGTGC TCGCTCCGGT TACGGCCCCG AGCGCCTGTC GCGGGCTTAT
AACATCAAGG GCGTTCTTGA AGCGGGCGGT GTCGCGGTTG TCGGCACCGA CTGGCCGGTG
AGCCCCCTCG ACCCGTGGAT CGCGCTCGAA ACCATGGTCA CCCGCGCGAA TCCGTGGGAC
GAGGCAGAGG GCCGGTTCGG CGAGCCCATC TCCCTTACTC AGGCTATTGA CGTCATGACC
AAGAACGGCG CCTGGTCGAT GGGCATCGAG CACGAGGCGG GCACGCTCGA AATCGGCAAG
TCCGCCGACA TCATCGTGCT CGACCGCAAC CTGTTCGAGG TAGAGCCCCA GGGCAATATT
CACTCCACCC GCGTGGACCT GACATTCGTG CAGGGCCAAC TCGTGCACGA CCGGCTGAAC
GGCGCATCCA ATGCCGTCTG GCACGGCGAG GCCCCGAAAC TATGGTGA
|
|---|
| Protein sequence | MRSLYDHRPS HAARSAQADL VLTNGQIYTG DPGLPWCRAL AVAGGRIVAR GERADMEHLI
GAQTEVTDLG GRFAMPGLYD MHTHPDLALA PRYAEDLDIG LVDPTPDQVR NAVLAYAARY
PDREWIYGQY FVRYTFRQAG LVPGRDWLDA VMPDRPVALL DRMWGTMMVN SEALLRAGIN
ADTPDPLNGY FERDPVSGEP TGLLIDGAYA LIHAAMPATP VAVLRAAYRD GIRYQSARGV
VATKYVHVCE NRLNALQSLD QSGELTLRVE AAISWQDDIF PVRRRWELLA GERHYYRSAR
LDASAVKFHF DGTVEPRSSY LMTPWDGANS AWRGKLNLTP EHLADMIWDM DRQGIRVIAH
CTGDAASDTF LDAVEAARRR PGGLGVRHQC AHSTILHGSN LKRFRDLNVT AEFSPVAWYP
SKFVSGARSG YGPERLSRAY NIKGVLEAGG VAVVGTDWPV SPLDPWIALE TMVTRANPWD
EAEGRFGEPI SLTQAIDVMT KNGAWSMGIE HEAGTLEIGK SADIIVLDRN LFEVEPQGNI
HSTRVDLTFV QGQLVHDRLN GASNAVWHGE APKLW
|
|---|
| |