Gene Smed_0722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0722 
Symbol 
ID5321559 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp775094 
End bp776977 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content61% 
IMG OID640789659 
ProductABC transporter related 
Protein accessionYP_001326413 
Protein GI150395946 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG5265] ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCCAGA AGAAGACGGT TTCCGCCGAC AGCGCCAATC CGATCGAAAC CATAGCTAAT 
CTTCGGCCAT ATATGTGGCC GGCTGATCGG CTTGATCTGA AACTGAGGGT CGTCTGGGCG
ACGGTTATCC TGGTGATCGC CAAGGCCGTG CTCATCCTCG TCCCCTATTT CTTCAAGTGG
GCGACGGATG CGCTCAACAA CAAGCCGGAG GCGCTGGGTT TTCTGCCGGT ATTCCTGACG
GGCGCCGTCA TGCTGGTGCT CGCCTATAAT TTTGCCCGTC TGCTGCAGGC CGGTCTCAAC
CAGTTGCGCG ATGCGCTGTT CGCCAGTGTT GGCCAACACG CCGTCCGGCA ACTTGCCTAC
AAGACCTTCG TTCACATGCA TCAGCTTTCG CTGCGCTTCC ATCTCGAGCG GCGTACCGGC
GGGCTCTCGC GCATCATCGA GCGCGGCACC AAAGGCATCG AGACGATCGT CCGCTTCACA
ATCCTCAACA GCGTGCCGAC TCTCATCGAG TTCCTGCTGA CTGCGGTGAT CTTCTGGTGG
GGCTACGGCT TCAAATACCT TCTGGTAACC GCGGTCACTG TCTCTCTCTA CATCTGGTTC
ACGGTAAGAG CGAGCGACTG GCGCATCGCC ATTCGCCGGT CGATGAACGA CAGCGACACC
GATGCGAACA CAAAGGCGAT CGATTCGTTG CTCAACTTCG AAACCGTCAA ATATTTCGGC
AACGAGGAGA TGGAGGCGAA CCGCTTCGAC AAATCCATGG AGCGTTACGA GCGGGCAGCA
ACGCAGGTCT GGACGTCGCT CGGCTGGCTG AACTTCGGGC AGGCACTAAT CTTCGGAGCC
GGGACCGCGG TGATGATGAC GATTTCGGCG CTCGCCGTGC AGCGCGGCGA ACAGACCATC
GGCGATTTCG TCTTCATCAA TGCGATGCTG ATCCAGCTCG CGATTCCGCT GAACTTCATC
GGTTTCGTCT ACCGCGAAAT CCGCCAGGGG CTGACGGATA TCGAGCATAT GTTCGATCTC
CTCGACGTTC GGGCGGAGGT CGTCGACCGG CCCGATGCGA AGGAGCTCGA GATCCAGCGA
GGCGCGATCG CCTTCAAGGA TGTACAGTTC GCCTATGACC CGGCACGGCC GATTCTGAAG
GGGATCAGCT TCGAGGTGCC CGCTGGAAAG ACAGTGGCCG TCGTCGGCCC CTCCGGAGCC
GGCAAGTCGA CCCTGTCGCG GCTGCTCTAT CGCTTTTACG ACGTGCAGGA AGGATCGATT
ACCATCGACG GTCAGGACGT GCGCGACATC ACTCAGAAGA GCCTCCGCGC CGTAATCGGG
ATGGTGCCGC AGGATACGGT GCTCTTCAAC GACACGATTG CCTACAATAT CCGTTACGGC
CGGGTGACGG CGAGCGACGC CGAGGTCGAG GCGGCGGCGG AGGCAGCGCA GATTGCCGAC
TTTATCCGCG ACCTGCCGGA TGGTTACCGA TCCATGGTCG GCGAGCGCGG GCTGAAGCTG
TCCGGTGGCG AGAAACAGCG CGTCGCGATA GCGCGCACCA TCCTGAAGGC GCCGCCAATC
CTGATTCTCG ACGAGGCCAC TTCCGCACTG GACACGAAGA CGGAGCAGGA AATCCAGGCT
GCGCTCGATA TCGTGTCGCG CAACCGAACC ACGCTCGTCA TCGCCCATCG CCTGTCGACA
GTTATCAATG CCGACGAGAT CATCGTCCTG AAGGATGGCG TCATCGCCGA ACGCGGCACG
CATGGCGAAC TGATTGACCG CAACGGCCTC TATGCCTCCA TGTGGAGCCG CCAGCGCGAG
GCAACGCAGG CCGAGGAGCA GCTGAAGCGC GTGCGTGAGA GCGACGATCT CGGCATTGTC
GACCGCGGTG TTCCGGCGCT CTGA
 
Protein sequence
MPQKKTVSAD SANPIETIAN LRPYMWPADR LDLKLRVVWA TVILVIAKAV LILVPYFFKW 
ATDALNNKPE ALGFLPVFLT GAVMLVLAYN FARLLQAGLN QLRDALFASV GQHAVRQLAY
KTFVHMHQLS LRFHLERRTG GLSRIIERGT KGIETIVRFT ILNSVPTLIE FLLTAVIFWW
GYGFKYLLVT AVTVSLYIWF TVRASDWRIA IRRSMNDSDT DANTKAIDSL LNFETVKYFG
NEEMEANRFD KSMERYERAA TQVWTSLGWL NFGQALIFGA GTAVMMTISA LAVQRGEQTI
GDFVFINAML IQLAIPLNFI GFVYREIRQG LTDIEHMFDL LDVRAEVVDR PDAKELEIQR
GAIAFKDVQF AYDPARPILK GISFEVPAGK TVAVVGPSGA GKSTLSRLLY RFYDVQEGSI
TIDGQDVRDI TQKSLRAVIG MVPQDTVLFN DTIAYNIRYG RVTASDAEVE AAAEAAQIAD
FIRDLPDGYR SMVGERGLKL SGGEKQRVAI ARTILKAPPI LILDEATSAL DTKTEQEIQA
ALDIVSRNRT TLVIAHRLST VINADEIIVL KDGVIAERGT HGELIDRNGL YASMWSRQRE
ATQAEEQLKR VRESDDLGIV DRGVPAL