| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0721 |
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| Symbol | |
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| ID | 5321558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 773082 |
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| End bp | 774800 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640789658 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001326412 |
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| Protein GI | 150395945 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.467953 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAGA ATAAGGCCAG CTGGGTGGCC CTTGGCGTCC TGGCAATCGC AACCGCATTG
ATGGTTTTTG TGGTTCAGCC AAACCTGCGC GAAAGCGACA AGGAGGCGGT GGCTCAATCC
GGGACAGGCG GCCAGCCTGC CCGACCGGCG GCAACAGACG CCGGAAGCTC GTCCGCCGTC
CCGCTAGGCA CAGCTGCGAA ACAGGCGGCA GCTGGCTCCC CGAATCAAGT CGCATCGTCT
GCGTCTGATC CGGCGACGGC CTGGGTGGTT CCGGGGTTCG ACGTGCTGCG CGTCGAACCG
GACGGCTCGA CGGTCGTCGC GGGCAGGGCC CAGCCGAATA CGAAGCTCGA AATTCTGAGC
GGCGACGCGG TCGTCGGTAC CGCGGACGTG GGCGCTGGTG GCGATTTCGC CGCCGTCTTC
GACAAGCCGC TCCCGGCGGG CGACCACCAG CTGACGCTCA GAAGCGTCGG CTCGGCCGGT
CAGAGCAAGT CGTCGGAAGA GGTTGCCACC GTTTCAGTGC CGAAGGATGC GAGTGGCCAG
TTGCTGGCGA TGGTCTCGAG GCAGGGCAAG GCGAGCCGGC TGATAACGAC GCCGGACGCT
GAGCCAAAGC CGGTGCAGGA GGCCGTCGCC ACGGGTATGG CGCCATCCGG TGAAACCGGT
GGAGCTTCCG ACACGTCCGC CGCTCCGGCC ACCGTTCCCG GACTGCAGGT CACCGCGGTC
GAGATCGAAG GCAGCATGAT GTATGTCGCA GGCAACGCCA AGCCCGGGGC GCTTGTCCGC
ATTTATGCGA ACGACCAACT GTTGGGTGAG GTGGAAGCCG ACGACAAAGG GCATTTCGTC
GTCGATGGCC CGATTGAACT CTCGATCGGC AGCCACATCA TTCGTGCCGA CATGATGAAT
GAAGACGCGA GCAAGGTGGC GATGCGTGCT TCCGTCCCCT TCGACAGGCC GGAAGGAGCC
CAGGTCGCCG CCATTGCCGG TACGACGCTC GGAGCGCCCA CTGCGGGTCT CGACAGGCTG
AAGGCGGAAG CGGGCAAGGC GCTGACACTG CTGAAAGGGC TCTTCTCCGG CGGGAAGCAA
CCCTCCACGG AGCAACTTGC CGCAGCCCGC TCGGCAACCG AATTCGCCCT TCAGTCGCTG
GCCGAATTCA AGCCGGCCGA CACCTCCGAT CCCGCGCTGG CTGCGGCGGC CGCCGAGGCT
TCGGACGCGG CCTCGACGGC GCTGGCGGCG CTAAAGGCCT CGCCGCAGGA CGCTGCAAGC
GTTGCGGCGG CGGTGGAGAA GGTGGATGGC GCTCTCGGGT CCGCATTGAC GCGCCAGAAT
GTCAGCACGT CGGTGGCTTC CGCCGAGCCG CTGGCCATGC CGACGAGCGA ACTCTCCCGG
ACAGCCGCCC CTCCGGCAGC CGGTGATGCG GCCGCACCTG CGGCCGAGCC AGCAGCGGCG
ACCGGTTTGA ATGCTGCAAC GGAACAGCCC GAAACGATCG AGCAGGCGCC ACTCAAGGAA
AGCAAGACGT CGGTGATCAT CCGCCGCGGC GACACGCTCT GGCAGATCTC GCGCCGTGTC
TACGGTGCCG GTCTGCGCTA CACCACGATC TATCTTGCAA ACCGCGAGCA GATCGAAAAC
CCGGACCTGA TCCGGCCCGG TCAGGTTTTT GGGGTTCCGG ACGAGATGCT TACCGAGGAA
GAATCGCGGG AAATTCACCG CAAGCATATG CGGCACTAA
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| Protein sequence | MIKNKASWVA LGVLAIATAL MVFVVQPNLR ESDKEAVAQS GTGGQPARPA ATDAGSSSAV
PLGTAAKQAA AGSPNQVASS ASDPATAWVV PGFDVLRVEP DGSTVVAGRA QPNTKLEILS
GDAVVGTADV GAGGDFAAVF DKPLPAGDHQ LTLRSVGSAG QSKSSEEVAT VSVPKDASGQ
LLAMVSRQGK ASRLITTPDA EPKPVQEAVA TGMAPSGETG GASDTSAAPA TVPGLQVTAV
EIEGSMMYVA GNAKPGALVR IYANDQLLGE VEADDKGHFV VDGPIELSIG SHIIRADMMN
EDASKVAMRA SVPFDRPEGA QVAAIAGTTL GAPTAGLDRL KAEAGKALTL LKGLFSGGKQ
PSTEQLAAAR SATEFALQSL AEFKPADTSD PALAAAAAEA SDAASTALAA LKASPQDAAS
VAAAVEKVDG ALGSALTRQN VSTSVASAEP LAMPTSELSR TAAPPAAGDA AAPAAEPAAA
TGLNAATEQP ETIEQAPLKE SKTSVIIRRG DTLWQISRRV YGAGLRYTTI YLANREQIEN
PDLIRPGQVF GVPDEMLTEE ESREIHRKHM RH
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