| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0686 |
|---|
| Symbol | |
|---|
| ID | 5321523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 738473 |
|---|
| End bp | 740779 |
|---|
| Gene Length | 2307 bp |
|---|
| Protein Length | 768 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640789623 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001326377 |
|---|
| Protein GI | 150395910 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.194488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCACGA CCGCGAGACC CATCGCCGCC ATCATTGCCA GCGAAATCAA GGCGAGCGCC
GCACAGGTTG CAGCCGCCGT CGAATTGTTG GACGGTGGTG CGACCGTGCC TTTCATCGCC
CGCTACCGCA AGGAAGCCAC GGGCGGGCTC GACGACACGC AGCTGCGCGT CCTGTCGGAG
CGCCTCACCT ATCTGCGCGA GCTCGAGGCG CGGCGTGCAT CGATCCTCGA TTCGATCCGC
AGCCAGGACA AGATGACCGA TGAACTCGAA CGCAAGATCG AGGGCGCGGT TACCAAAGCG
GAGCTCGAAG ACATCTACCT GCCCTTTAAG CCGAAGCGCC GCACCAAAGC GGAGATCGCG
CGCGAGCGGG GCCTTGGCGC GCTGGCGGAC GCCATCCTTT CCGACCGTTC GACAGCGCCT
GCCGAACGTG CTGCCGCCTT TCTCACCGCC GATGTGCCGG ACGCCAAGGC CGCACTCGAT
GGTGCCCGCG ACATCATCGC CGAGGGCATG ACCGAGAATG CCGAGCTTCT TGGGCAGCTG
CGGAGCTACA TGCGGGGTGC AGCCTTCCTG CGCGCCCGCG TCGTGGGTGG CAAACAGGAG
TCCGGCGCAA AGTTCTCCGA CTATTTCGAT CACTCCGAGC GATGGGCGAC GGTGCCCGGC
CACCGCGCGC TTGCGATGCT TCGCGGCTGG AACGAGGAGG TCCTGTCCGT GGACATCGTT
GTCGACGAGG ATGCGGCGCC TTCGCATAGA CCGATCGAGC GTATGATCGC GGCTGCCTAC
AGCGTTGGCG ACCGGCTGCC CGGTGACAAA TGGCTGCTGG AGGTCATCGG CTGGACCTGG
CGCGTGAAGC TTTCGCTTTC GCTATCACTG GACCTGATGC GCGAGCTTCG AGAGCGCGCC
GAGGAGGAGG CCATCCGCGT CTTCGCGCGC AATCTCAAGG ACCTGCTGCT TGCAGCGCCT
GCGGGCTCGC GTCCGACCAT GGGCCTCGAC CCTGGCATCC GGACGGGCGT CAAGGTCGCG
ATCGTCGACG GTACCGGCAA GCTCCTCGAC ACGAGCACGG TCTATCCATT TCCGCCGAAG
AACGACATTC GCGGGACTCA GGCAGAGCTT GCGGCGCTTG TGCGCAAACA CAAGGTGGAA
CTTATCGCGA TCGGCAACGG CACCGGGAGC CGTGAAACCG AAAAGCTCGT CGCGGATATG
CTCGCTGCCA TGCCGGCGCC GAAGCCGACA AAGGTGATCG TCTCCGAGGC GGGAGCATCG
GTCTATTCCG CTTCGGAGAC GGCGGCTGCC GAGTTCCCCG GCCTCGACGT GTCCTTGCGG
GGTGCCGTTT CCATCGCGCG CCGGCTCCAG GATCCCTTGG CCGAGCTCGT GAAAATCGAA
CCGAAGTCGA TCGGGGTCGG TCAATATCAG CACGACGTTG ATCAGTCGAA GCTCAGCCGT
TCGCTGGATG CCGTCGTCGA GGATGCCGTG AACGCGGTCG GGGTCGATCT CAACACCGCC
TCGGCGCCGC TGCTGGCGCG CGTTTCGGGG TTGGGTAAGT CCTCGGCGGA GGCGATCGTT
GCGCATCGCG ATGCGCTGGG CGCCTTCGCC AGCCGCAAGG ACCTTTTGAA AGTGCCTCGC
CTCGGTGCCC GCACTTTCGA ACAATGCGCC GGCTTCCTCA GGATCACGAA CGGCTCCGAG
CCGCTCGATG CGTCTGCGGT GCATCCGGAG GCTTATGGAG TCGCAAAGAA GATCGTCGCC
GCCTGCGGTC GTGATGTGCG TTCTCTGATG GGCGACAGCG CCGAACTGAA GAAGCTCGAT
CCCCGCATTT TCGTCGATGA ACGCTTCGGC CTGCCAACTG TCAAGGACAT TCTCGCTGAA
CTGGAGAAAC CGGGTCGCGA TCCACGCCCG AGCTTCAAAA CGGCCACCTT CGCGGAAGGG
ATCGACGACA TCAAGGATCT GAAGGTCGGC ATGCGCCTTG AGGGCACGGT GACCAATGTC
GCCGCCTTCG GCGCTTTCGT CGATATCGGC GTGCATCAGG ACGGTCTCGT CCATGTGTCG
CAATTGGCCG ACCGCTTCGT CAAGGATCCG CATGAGGTCG TCAAAGCCGG GGACGTCGTG
CACGTCCGTG TCACGGAGGT CGATGTGGCG CGAAAGCGCA TTGGACTGTC GATGCGCAAG
GAAGGTGGCG CCGAAACGCC CCGAGAGGCG AGGGGGACGG CGCCGAACGG CGGCAATCGG
GGTGCGCCCG CTCGACCGCA GCCGCCGCAG CAGCCGGCGC AAGGCGCCTT CGGTGAAGCG
CTGATCGCGG CGATGAAGAA AAAATGA
|
|---|
| Protein sequence | MVTTARPIAA IIASEIKASA AQVAAAVELL DGGATVPFIA RYRKEATGGL DDTQLRVLSE
RLTYLRELEA RRASILDSIR SQDKMTDELE RKIEGAVTKA ELEDIYLPFK PKRRTKAEIA
RERGLGALAD AILSDRSTAP AERAAAFLTA DVPDAKAALD GARDIIAEGM TENAELLGQL
RSYMRGAAFL RARVVGGKQE SGAKFSDYFD HSERWATVPG HRALAMLRGW NEEVLSVDIV
VDEDAAPSHR PIERMIAAAY SVGDRLPGDK WLLEVIGWTW RVKLSLSLSL DLMRELRERA
EEEAIRVFAR NLKDLLLAAP AGSRPTMGLD PGIRTGVKVA IVDGTGKLLD TSTVYPFPPK
NDIRGTQAEL AALVRKHKVE LIAIGNGTGS RETEKLVADM LAAMPAPKPT KVIVSEAGAS
VYSASETAAA EFPGLDVSLR GAVSIARRLQ DPLAELVKIE PKSIGVGQYQ HDVDQSKLSR
SLDAVVEDAV NAVGVDLNTA SAPLLARVSG LGKSSAEAIV AHRDALGAFA SRKDLLKVPR
LGARTFEQCA GFLRITNGSE PLDASAVHPE AYGVAKKIVA ACGRDVRSLM GDSAELKKLD
PRIFVDERFG LPTVKDILAE LEKPGRDPRP SFKTATFAEG IDDIKDLKVG MRLEGTVTNV
AAFGAFVDIG VHQDGLVHVS QLADRFVKDP HEVVKAGDVV HVRVTEVDVA RKRIGLSMRK
EGGAETPREA RGTAPNGGNR GAPARPQPPQ QPAQGAFGEA LIAAMKKK
|
|---|
| |