| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0637 |
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| Symbol | |
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| ID | 5321473 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 682614 |
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| End bp | 684167 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789573 |
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| Product | protease Do |
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| Protein accession | YP_001326328 |
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| Protein GI | 150395861 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.136267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATGA TCAAAACGTC CCGTCCCTCC TTGAAGACAG TTCTGAAGAC CACGACTGTT
GCCGGCGTTG CCGCCGTACT GCTGACCACC GGGCTTCCGG CACAGATCAC TCAGTCCTTT
GCCGAAGCGG TCAGCGTGCC GGCTCCCGCC GTTCCGAGCT TTGCCAACGT CGTCGAGGCG
GTTTCGCCGG CGGTCGTTTC CGTTCGCGTG CAGGCACGTG AACAAGCCAG TGACGACGAA
AGCAACTTCA CCTTTGATTT CGGCGGTCGC GGCTTCGACG ATCTGCCGGA AGACCATCCG
CTTCGGCGCT TCTTCCGCGA ATTCGACCCG CGTGACAACG ACCGTGCCGA CCGGTGGCGC
GACCGCCGCG GCCCGCGCGG TGAGGGCCGT CTGCGTCCGC GGGCGCAAGG CTCCGGCTTC
TTCATCACCG AAGACGGCTA CCTCGTCACC AACAACCACG TCATTTCTGA CGGATCGGCC
TTCACCGTCA TTATGGATGA CGGTACCGAG CTCGAAGCCA AGCTCGTCGG CAAAGACAGC
CGGACAGATC TTGCAGTGCT CAAGGTGGAC GCCAAGCGAA AGTTCACACA TGTGAGCTTC
GCCGATGACG AAAAGGTGCG TGTCGGCGAC TGGGTGGTCG CTGTCGGTAA TCCCTTCGGC
CTTGGCGGCA CCGTGACAGC GGGGATCATC TCCGCTCGGG GCCGCGATAT CGGCTCCGGT
CCTTACGACG ATTACCTGCA GGTCGACGCA GCGGTGAACC GTGGGAATTC CGGAGGCCCG
ACCTTCAACC TCTCCGGAGA GGTGGTCGGA ATCAACACGG CCATATTCTC GCCTTCCGGC
GGCAATGTCG GCATCGCCTT CGCAATTCCC GCCTCCGTCG CGAAGGACGT CGTTGACTCC
TTGATCAAGG ACGGCACCGT TTCGCGTGGC TGGCTGGGTG TCCAGATCCA GCCGGTGACG
AAGGATATTG CCGAGTCGCT CGGCCTTGCC GAGGCGAAAG GTGCTCTCGT CGTAGAGCCT
CAAACGGGCT CGCCGGGCGA AAAGGCCGGC ATCAAGAACG GCGACGTCGT GACGGCCCTT
AATGGCGAGC CGGTCAAGGA TCCGCGTGAT CTTGCCCGGC GAGTGGCGGC ACTGCGCCCC
GGCTCCACTG CCGAGGTCAC TCTTTGGCGC TCCGGCAAGT CCGAAACGGT CAAGCTCGAG
ATCGGCACGC TGCCGAGCGA TGCCAAGGAG ACTGCACCGA CAACCGGCGA AGCACAGCCG
GACGAAGGTC AGGCAAGCGA CGAGGCACTG GCCGGGCTCG GCCTGACGGT GACCCCGTCG
GAAGACGACA GGGGCGTCAC GATCACATCC GTCGACCCGG ACTCCGACGC TAGCGATCGC
GGTCTGAAGC AAGGCGAGAA GATCGTCTCC GTCAACAATC AGGAAGTGAA ATCGGCGGAC
GACATTCTCA AGGTGATCAA CAACGCCAGA AAGGACAATC GGACCAAGGC GCTGTTCCAG
ATCGAAGCCC AGGAAGGCAG CCGCTTCGTC GCACTCCCGA TCGCTCAGGG CTGA
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| Protein sequence | MSMIKTSRPS LKTVLKTTTV AGVAAVLLTT GLPAQITQSF AEAVSVPAPA VPSFANVVEA
VSPAVVSVRV QAREQASDDE SNFTFDFGGR GFDDLPEDHP LRRFFREFDP RDNDRADRWR
DRRGPRGEGR LRPRAQGSGF FITEDGYLVT NNHVISDGSA FTVIMDDGTE LEAKLVGKDS
RTDLAVLKVD AKRKFTHVSF ADDEKVRVGD WVVAVGNPFG LGGTVTAGII SARGRDIGSG
PYDDYLQVDA AVNRGNSGGP TFNLSGEVVG INTAIFSPSG GNVGIAFAIP ASVAKDVVDS
LIKDGTVSRG WLGVQIQPVT KDIAESLGLA EAKGALVVEP QTGSPGEKAG IKNGDVVTAL
NGEPVKDPRD LARRVAALRP GSTAEVTLWR SGKSETVKLE IGTLPSDAKE TAPTTGEAQP
DEGQASDEAL AGLGLTVTPS EDDRGVTITS VDPDSDASDR GLKQGEKIVS VNNQEVKSAD
DILKVINNAR KDNRTKALFQ IEAQEGSRFV ALPIAQG
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