Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0626 |
Symbol | |
ID | 5321462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 671421 |
End bp | 673622 |
Gene Length | 2202 bp |
Protein Length | 733 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640789562 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001326317 |
Protein GI | 150395850 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.10684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCAGGAAC CGAGGAAAGA GGACAACCGG CCGAAACGGC GACATATCTT TCTTCGGATC GATTCCTGGA TCGATTCGAC CGTGTGGAGT GCGGGATTCC GCCTCGCGGA ATGGTGGGAA GATACCACCA TCTTCTTCCG ACGGTTTCGC GTACGCGGCT GGAAGAAAGC CCTCTTCGAA GTGCTTGGCG AAGGCATGAC ATTGGGTGCG GCAGGCTCCG TACTGATGCT GGCGCTCGCC CTCCCCGCCT TCGAGGAGAC CACCGGCAAC TGGCGCGCGC AAAGCGATTT CGCGGTCACC TTTCTGGACC GTTACGGCAA CGAGATCGGC CACCGGGGTA TTATCCATGA GGATTCCGTC CCGATCGACG AGCTTCCGGA TCACCTTATA AAGGCGGTGC TCGCCACCGA AGACAGGCGC TTCTTCGACC ATTGGGGGAT AGACTTTCTA GGGCTCGCAC GCGCGATGAC CGAGAACGCT CGCGCGGGTG GCGTTGTTCA AGGCGGTTCG ACACTTACGC AGCAGTTGGC AAAGAACCTG TTCCTCTCGA ACGAACGGAC GATCGAGCGC AAGATCAAAG AGGCTTTCCT GGCCGTCTGG CTCGAATCCA ACCTTTCGAA GAAGGAAATC CTCCGCCTCT ATCTGGACCG TGCCTATATG GGCGGCGGCA CCTTCGGCGC CGCGGCGGCA GCCCAATTCT ATTTCGGCAA GGCAATTACC GACGTCAATC TTGCCGAGTC CGCGATGCTC GCAGGGCTCT TCAAGGCGCC GGCACGCTAT GCTCCGCATG TGAACCTGCC GGCGGCGCGT GCCCGCGCCA ACGAAGTTCT GAGCAATCTC GTCCAAGGCG GCCTGATGAC GGAGGGACAG GTGATCGCCG CTCGCCTGAC TCCGGCGTCC GTCGTTGATC GTGCGCAGGT CAAGGCACCG GATTTCTTCC TCGATTGGGC TTTCGAAGAG GTCCAGCGCA TCGCCGCCCC CTTCGCGCAA CATTCCCTGA TCGTGCGCAC GACGATCGAC ATGGGGCTGC AGCAAGCAGC CGAGGAAGCG GTCGAGTCGG GCCTCAGGCA ATATGGCGAG ACCTACAAGG TCAAGCAGGG TGCGCTGGTA ATGGTCGAAC ATGGCGGCGC GGTAAGGGCG ATGGTCGGCG GCCGTGACTA CGGCGAAAGC CAGTTCAACC GTGCGACGCG CGCGCTTCGC CAGCCGGGCT CGTCTTTCAA GGTCTATACC TATGCTGCCG CGATGGAAAA GGGCATGAAG CCCGAAACCG TCGTCGTCGA CGCGCCGATC ACCTGGCGTG GCTGGTCGCC TCAGAACTAT GCCCGCAAAT ATGCCGGCCG GGTGACGCTG ATGAACGCGC TCGCCAGATC GATCAACACT GTTCCGGTCC GCCTCGCAAA GGACAAGCTT GGGACCGAGA TCATTGCCGA GACCGCCAAG CGAATGGGCA TAGAAACCCC CATCCGTACC GACAAGACCA TGCCGCTCGG CACTTCCGAA GTCACCGTGC TCGACCAGGC GACGGCCTAT GCGGTCTTTC CGGCCGGCGG GTTCCAATCG CGGCGCCACG GCATCAGCCA GATTCTCAAC TATGACGGCG ACATTCTCTA CGATTTCGGG CGCGACGCGA CGCCGGCACG CAGGGTGCTG AGCGAAGAGG CGGCCTCATC GATGAACCGC ATGCTGACGC AGATTCCGGT TATCGGCACG GCGCGACGCG CAGCCCTCGA CAACGGCATC GTCACGGGCG GCAAGACAGG CACGACACAG GCTTATCGCG ATGCGTGGTT CGTCGGTTTC ACGGGCGACT ACACGACTGC CGTCTGGTTC GGCAATGACG ACTATACCTC CACCGACGAA ATGACAGGCG GCTCTCTCCC CGCGATGACC TTCAAGCGAC TGATGGATTA TGCCGAGCAC GGGATCGAGC ATCGTGCGAT ACCCGGAATC GAAGCGCCAT CCGAGCCGGC GAAACAACAG CCGGCCGAAA CCGCCAAAAA GGACGACAAC GCCCTGCCGC CGCTCGTGCG CCCGCGATCG CTTTCCGCCG ACGTAACCCG GCTTCTGAAG AAAATCGGCG GCACTTTCGA AAAGGCGCAG CCGTTGAAGG CACGCGAACG GCCCGGCGGC AAGGTGGCCG TACTCGAAAC GCCGAGTCAA GGGTCTCACA TCCGGCCCTT GCGCAACACG ACAAACAATT GA
|
Protein sequence | MQEPRKEDNR PKRRHIFLRI DSWIDSTVWS AGFRLAEWWE DTTIFFRRFR VRGWKKALFE VLGEGMTLGA AGSVLMLALA LPAFEETTGN WRAQSDFAVT FLDRYGNEIG HRGIIHEDSV PIDELPDHLI KAVLATEDRR FFDHWGIDFL GLARAMTENA RAGGVVQGGS TLTQQLAKNL FLSNERTIER KIKEAFLAVW LESNLSKKEI LRLYLDRAYM GGGTFGAAAA AQFYFGKAIT DVNLAESAML AGLFKAPARY APHVNLPAAR ARANEVLSNL VQGGLMTEGQ VIAARLTPAS VVDRAQVKAP DFFLDWAFEE VQRIAAPFAQ HSLIVRTTID MGLQQAAEEA VESGLRQYGE TYKVKQGALV MVEHGGAVRA MVGGRDYGES QFNRATRALR QPGSSFKVYT YAAAMEKGMK PETVVVDAPI TWRGWSPQNY ARKYAGRVTL MNALARSINT VPVRLAKDKL GTEIIAETAK RMGIETPIRT DKTMPLGTSE VTVLDQATAY AVFPAGGFQS RRHGISQILN YDGDILYDFG RDATPARRVL SEEAASSMNR MLTQIPVIGT ARRAALDNGI VTGGKTGTTQ AYRDAWFVGF TGDYTTAVWF GNDDYTSTDE MTGGSLPAMT FKRLMDYAEH GIEHRAIPGI EAPSEPAKQQ PAETAKKDDN ALPPLVRPRS LSADVTRLLK KIGGTFEKAQ PLKARERPGG KVAVLETPSQ GSHIRPLRNT TNN
|
| |