| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0582 |
|---|
| Symbol | |
|---|
| ID | 5321418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 631602 |
|---|
| End bp | 632264 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640789518 |
|---|
| Product | haloacid dehalogenase, type II |
|---|
| Protein accession | YP_001326273 |
|---|
| Protein GI | 150395806 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.618635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTACG CGGCTTATGT TTTCGACGCC TATGGCACGC TTTTCGACGT GCATGCGGCC
GTACGCCGGC ATGCCGAAGC GATCGGGCCG GACGGTCAGG CCTTTTCGGA ACTCTGGCGC
GCCAAGCAAC TCGAATATTC CTGGGTACGC TCGCTGATGG GCGTCTATGT CGACTTTTGG
GAATTGACCG AGCAATCGCT GGACCACGCC TTTCAGCGCT TCCCCTCGGC CGATCCCAAA
CTCAAGAAGC CGCTTCTCGA TGCCTATTGG GCGCTCGACT GTTATCCGGA AGTTCCCGCG
GTCCTGAAGG GTTTGAAGGA GCGGGGCGCC CGCATCGCCA TTCTTTCCAA CGGTTCGCCG
GCCATGCTGG CATCGGCTGT CAAGAACGCG GCCCTCGATA TCATCATAGA CGACGTCTTT
TCGGTCGACG CAGTCAAGGC ATTCAAGACG GCACCGGCCG TCTACGATCT GGTGACGACG
AGCTATCGGC TCTACCCCCA GGCGGTCTCG TTCCAGTCCT CGAACCGATG GGACGTCGCC
GGTGCAACCA AGTTCGGTTT CCGTACGGTC TGGATCAACC GCGCCGATAG CCCGGATGAA
TACAAGGACT ACGGCCCTTC GCTCATCCTT CCCTCGCTCG AAAGCTTGCA GTTCGGCATA
TGA
|
|---|
| Protein sequence | MSYAAYVFDA YGTLFDVHAA VRRHAEAIGP DGQAFSELWR AKQLEYSWVR SLMGVYVDFW
ELTEQSLDHA FQRFPSADPK LKKPLLDAYW ALDCYPEVPA VLKGLKERGA RIAILSNGSP
AMLASAVKNA ALDIIIDDVF SVDAVKAFKT APAVYDLVTT SYRLYPQAVS FQSSNRWDVA
GATKFGFRTV WINRADSPDE YKDYGPSLIL PSLESLQFGI
|
|---|
| |