Gene Smed_0576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0576 
Symbol 
ID5321412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp626381 
End bp626857 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content62% 
IMG OID640789512 
Producttranscriptional regulator, TrmB 
Protein accessionYP_001326267 
Protein GI150395800 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0950259 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACGA AAGCGGCAAA ATTCGACTCA GGTTCCGATG AGGCGCTGGC GCTTGGTCAG 
CAGCTCTGCT TTGCGGTCTA TTCGGCGGCG CATGCCTTCA ATCGCGCCTA CAAGCCCTTG
CTCGACCGTT TTGGGCTGAC CTATCCCCAA TATCTCGTGC TTTTGGCGCT CTGGCAGCAG
GACCGCATGA CGGTGAAGCG AATTGGCGAA GAGCTGGGTC TCGATTCAGG CACGCTTTCA
CCGCTGCTCA AGCGGCTGGA GGCGGCCGGC TATGTCCGCC GTGCGCGCGA TGCGGCAGAC
GAGCGGCAGG TCATCGTCAG CCTGACGCAA GGCGGACGCG ATCTGAAGGC CGAAGCATTC
GGTATTCTAC GCGATATCGG CAATGCCTCA GGCTGCAGCC TTGAGGAAGT CCGGGAGATG
CGCGACGCAC TGCATCGGCT GACGCAGCGG CTCGCCGGCC GCCATCAAGA AAGCTGA
 
Protein sequence
MTTKAAKFDS GSDEALALGQ QLCFAVYSAA HAFNRAYKPL LDRFGLTYPQ YLVLLALWQQ 
DRMTVKRIGE ELGLDSGTLS PLLKRLEAAG YVRRARDAAD ERQVIVSLTQ GGRDLKAEAF
GILRDIGNAS GCSLEEVREM RDALHRLTQR LAGRHQES