| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0562 |
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| Symbol | |
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| ID | 5321398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 608815 |
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| End bp | 610464 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640789498 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001326253 |
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| Protein GI | 150395786 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.55111 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGCAG ATTTCGTCAT CATCGGTTCC GGCTCGGCGG GCTCGGCCCT CGCCTATCGC
CTGTCGGAAG ACGGCGCGAA TTCGGTCGTC GTGCTCGAAT TCGGCGGCTC GGACGTCGGC
CCGTTCATTC AGATGCCGGC GGCGCTGGCC TGGCCGATGA GCATGAACCG TTATAATTGG
GGCTACCTCT CCGAACCCGA GCCGAACCTC AACAACCGGC GCATCACCGC GCCGCGCGGC
AAGGTGATCG GCGGCTCCTC TTCGATCAAC GGCATGGTCT ATGTCCGCGG GCACTCGGAA
GACTTCGACC GGTGGGAAGA ACTCGGCGCA AAAGGCTGGG CCTATGCGGA CGTGCTGCCC
TATTACAAGC GGATGGAGCA TTCGCACGGG GGCGAGGAGG GTTGGCGCGG CACCGACGGA
CCGCTGCACG TGCAGCGCGG CCCGGTCAAG AATCCCCTTT TCCACGCCTT CATCGAGGCC
GGAAAGCAGG CCGGCTTCGA GGTCACGGAG GACTACAACG GCTCGAAGCA GGAAGGGTTC
GGGTTGATGG AGCAGACGAC ATGGCGGGGC CGCCGCTGGT CGGCCGCATC CGCCTATTTG
AGGCCAGCGC TCAAGCGCCC GAATGTCGAG CTCGTCCGGT GCTTCGCCCG CAAGATCGTT
ATCGAGAACG GCCGGGCGAC CGGCGTGGAG ATCGAGCGCG GCGGCCGCAC CGAGGTCGTC
AGGGCCAATC GCGAGGTGAT CGTCTCCGCC TCCTCCTTCA ACTCGCCGAA GCTCCTGATG
CTCTCCGGCA TCGGCCCCGC CGCGCATTTG CAGGAGATGG GCATCGACGT GAAGGCCGAC
CGGCCCGGCG TCGGCCAGAA CCTGCAGGAC CACATGGAAT TCTATTTCCA GCAGGTGAGC
ACCAAGCCGG TTTCGCTATA TTCTTGGCTG CCATGGTTCT GGCAGGGCGT TGCCGGGGCA
CAATGGCTCT TCTTCAAAAG AGGCCTCGGC ATTTCCAACC AGTTCGAGTC CTGCGCCTTC
CTGCGCTCGG CGCCCGGCGT CAAACAGCCG GACATCCAGT ATCATTTCCT TCCCGTCGCC
ATCAGTTATG ACGGCAAGGC GGCAGCGAAG TCGCACGGCT TCCAGGTGCA TGTCGGCTAC
AATCTCTCCA AGTCGCGCGG CGACGTCACG CTTCGCTCGT CCGATCCGAA AGCCGACCCG
GTGATCCGCT TCAACTATAT GAGCCATCCC GAGGACTGGG AGAAGTTTCG CCATTGCGTG
CGGCTGACCC GCGAGATTTT CGGCCAGAAG GCGTTCGACC TCTATCGTGG CCCGGAAATC
CAGCCGGGCG AGAAGGTCCG GACCGACGAG GAGATCGACG CCTTTCTGCG CGAGCATCTC
GAAAGCGCCT ATCACCCCTG CGGCACCTGC AAGATGGGCG CGAAGGACGA CCCGATGGCC
GTGGTCGACC CGGAAACCCG CGTCATCGGT GTCGATGGCC TTCGCGTTGC CGATTCCTCG
ATTTTCCCGC ATATCACCTA TGGCAATCTG AACGCTCCCT CGATCATGAC CGGCGAAAAG
GCCGCCGACC ACATCCTCGG GAAGCAGCCT CTCGCCCGTT CCAACCAGGA ACCCTGGATC
AATCCGCGCT GGGCGGTGAG CGATCGGTAG
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| Protein sequence | MQADFVIIGS GSAGSALAYR LSEDGANSVV VLEFGGSDVG PFIQMPAALA WPMSMNRYNW
GYLSEPEPNL NNRRITAPRG KVIGGSSSIN GMVYVRGHSE DFDRWEELGA KGWAYADVLP
YYKRMEHSHG GEEGWRGTDG PLHVQRGPVK NPLFHAFIEA GKQAGFEVTE DYNGSKQEGF
GLMEQTTWRG RRWSAASAYL RPALKRPNVE LVRCFARKIV IENGRATGVE IERGGRTEVV
RANREVIVSA SSFNSPKLLM LSGIGPAAHL QEMGIDVKAD RPGVGQNLQD HMEFYFQQVS
TKPVSLYSWL PWFWQGVAGA QWLFFKRGLG ISNQFESCAF LRSAPGVKQP DIQYHFLPVA
ISYDGKAAAK SHGFQVHVGY NLSKSRGDVT LRSSDPKADP VIRFNYMSHP EDWEKFRHCV
RLTREIFGQK AFDLYRGPEI QPGEKVRTDE EIDAFLREHL ESAYHPCGTC KMGAKDDPMA
VVDPETRVIG VDGLRVADSS IFPHITYGNL NAPSIMTGEK AADHILGKQP LARSNQEPWI
NPRWAVSDR
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