| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0542 |
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| Symbol | |
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| ID | 5321376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 585754 |
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| End bp | 586413 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789476 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001326233 |
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| Protein GI | 150395766 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0173803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.811025 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACAGCG TCGACATCCG CCACATCGTT TTCGACATCG GCAAGGTGCT GATCCATTAC
GATCCGAACC TCCCTTTCTC CCGCCTCATC CCGGACGAGT CGGAACGCAA CTGGTTCTTC
GCCAATGTCT GCACCTCGGA CTGGAACATA GAGCAGGACC GCGGCCGTTC CTGGCAGGAG
GCGGAAGCCC TCCTCATCCG CGACTATCCG GACCGGGCAG ATCACATCCG CGCGTTTCGC
CGGCACTGGC ATGAAATGGT GCCGCACGCC TATGCGGAGA CGGTCGGAAT CATGGAAGGC
CTGATCGCCG ATGGCTGGGA CGTGACGATG CTGACCAATT TCGCCTCGGA TACCTTCCGT
GAGGCGCAGA AGCTTTATCC CTTCCTGACC CTGCCGCGCG GTGTCACAGT CTCCGGCGAT
GTGAGGCTCA TCAAACCGGA TCGCGCCATC TATCAGACTC ATGCCCGGAC GTTCGGCCTC
GACCCGGGCG CGACGCTCTT CATCGACGAC AGCCCGGCCA ATGTCGAAGG CGCGCGGGCG
GCCGGCTGGC ACGCGGTTCA GTTCACCGAT CCTGACAAGC TGAAACGTGA CCTTGCTGCC
TATGGCGTCC AGCCCTCGGA CCACGCAGCA CCTTCCCTGA TTGCGGCTGA CGCGCCATAA
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| Protein sequence | MNSVDIRHIV FDIGKVLIHY DPNLPFSRLI PDESERNWFF ANVCTSDWNI EQDRGRSWQE
AEALLIRDYP DRADHIRAFR RHWHEMVPHA YAETVGIMEG LIADGWDVTM LTNFASDTFR
EAQKLYPFLT LPRGVTVSGD VRLIKPDRAI YQTHARTFGL DPGATLFIDD SPANVEGARA
AGWHAVQFTD PDKLKRDLAA YGVQPSDHAA PSLIAADAP
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