Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0533 |
Symbol | |
ID | 5321367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 573936 |
End bp | 576848 |
Gene Length | 2913 bp |
Protein Length | 970 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640789467 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001326224 |
Protein GI | 150395757 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.935916 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCTGC CACGTAAGCC GCACGCTTGG CCAGCCACAT GGTTGACGGC GATTCTGGTC GCACTCGTCG TTTTCGCCCT TGGCTTTGGC GGCGGCGTTG CGCATGCGCT CGAGCCGGTG AAGATCTCGC GCGAAGACAC GGCGCTCGAC CTTACCGCAA CGACGGAGAT CTATAGCGGC CGGGGCGACG CATTCCAGGT TTCGACCGCC CCGGGCACTG ACGGCATCGT CCGGCGCATC GAAGTGCGTT CCAGCACCGA GAGCCATCAG GGAGACTGGG CCGTATTCGC GCTCGCCAAC GTTTCGGAAG AGCAGCTCGA ACGCGTGATC GTGGCGCCGC ATTTCCGCCT CGTGAATTCG AAGCTCTTCT GGCCCGACCT CGGGTCGCAG CGCATTCTTT CGATCACGCC GAGCGAGGGT TTCGCGCTTG ACCGGCAACC GAGCGAAGAG GCGGACGTCT TCCGCATCAC GCTCAATCCG GGCGCGGTGA TCACCTTCGT TGCCGAACTC ACGACGCCGG AGCTGCCGCA GATCTATCTT TGGCAACCGG ACGCCTACAA GGACACCGTC AACGCTTTCA CGCTTTATCG CGGTATCGTG CTCGGGATCG CCGGCCTGCT GGCGGTTTTC CTGACAATCC TGTTCGTCGT CAAGGGCACG TCGATGCTGC CGGCGACGGC AGCTCTCGCC TGGGCAGTGC TCGCCTATAT CTGTGTCGAT TTCGGCTTCC TTTCGAAGCT CATCACCGTG ACTGCGGATG ACGAGCGCAT ATGGCGTGCA GGAACGGAAG TGTTTCTTGC GGCCGGGCTC GTCGTCTTTC TTTTCACCTA TCTCAATCTC AATCGCTGGC ATCAGCATCT CGGTTATGCG ACGCTTGCCT GGATTCTCGG CCTCGGGCTG CTCTTTGGCG TTGCCGTCTA CGATCCGGCA ATCGCCTCCG GCATCGCCCG CCTGTCCTTC GCGCTGACGG CCACCGTCGG GATCCTGCTG ATCGCCTATC TCGGCTTCAA CCGCTACGAC CGTGCGATTC TCCTTGTTCC CGCCTGGCTG CTGATCCTCG TCTGGCTGTT CGGCGCCTGG CTTGCCGTAA CCGGCCAGCT TGCCAACGAC ATCGTGCAAC CGGCGCTCGG CGGCGGGCTC GTTCTGATCG TCCTATTGAT CGGCTTCACG GTCATGCAGC ACGCCTTTGC CGGCGGAGCC TATCAGCAGG GTCTGTTCTC CGATCTTGAA CGTCAGGCGC TGGCGCTCAC CGGCTCGGGG GACACGGTCT GGGATTGGGA CGTGGCACGC GACCGTGTGG TCACCATTCC CGATATCTCG CACCAGCTCG GGCTTTCGCT GGGGACGATG AACGGGCCGG TACGCAACTG GTTGCCACGG TTGCACCCGG ATGACCGCGA TCGTTTCCGG GCAACGCTTG ACGTGCTGCT CGAACATCGC CGCGGCCGGC TCAACCATGA GTTCCGCGTT CGCGCCGAGG ACGGCCATTA TCATTGGCTC TCCATCCGGG CGCGCCCGGT GCTCGGGGCC AACGGCGAAA TCATCCGTTG CGTCGGCACC ATCATCGACA TTACCGAACA GCGCAATTCC GTCGAGCGGC TCTTGCACAA CGCGCTTCTG GACAATCTGA CGGGTCTGCC TAACAGGCAG GTCTTCCTCG ACCGGCTGCA GGCTATCCTT CTTATGGGCG ACGGCAGCAG CCCGATACGG CCGACCGTGC TTGCCATCGA CATCGACCGT TACAAACAGG TCAACGACAT GTTGGGAATT GCGGCCGGCG ACAATATCCT CATCGCGCTC ACGCGTCGGC TGCGTCGCCT TCTACGTCCG CAGGACACGC TCGCGCGTCT CGGCGGCGAC CAGTTCGGAC TGATCCTCAT GTCCGAGCGC GATCCGGCCA AAATCGCCGA CTTCGCCGAT GCGATCAGCA AGGCAATCAT GGTTCCGCTC AATTACGGCA ATCGTGAGAT CAACCTGACC GCTTCGATCG GCCTGGTCGC CTGGCTCGAT CAGGAACAGA GCGCTGCCGG ACTGCTCGAC GATGCCGAGC TTGCGATGTT CCGCGCCAAG AAGGCAGGCG GCAACCGCGT CGAGCCGTTC AGGCCGGCTT TCCGGACCTC CGGCTCCGAC CGTCTGCAGC TCGAAACAGA CTTGAAGCGC GCCATGGAGC GCAAGGAGCT TTCCCTCGTT TACCAACCGA TCGTCCGACT CAGCGACGCC GAGATCGCCG GCTTCGAGGC ACTCATGCGT TGGGAACATC CCAAGCGCGG CAATATTTCG CCGACCGAAT TCATCCCAAT TGCCGAAAAT TCCGAGCTGA TAAGCCACCT CGGCCTGTTC GCCTTCGACA AGGCAACAAG CGATCTCGCC GAATGGCAGA CTCAGACCGG TGACCTGCCG ATCTTCGTCT CCATCAATCT GTCGAGCGCA CAGCTTCTGA ACAACGAGCT CTATGACGAC ATGCGTGCGA TTCTCAGCAA GAGCCGCTGC GACCCGTCCC AGATCAAGAT GGAGCTGACG GAATCGCTTG TCATGGAAAA CCCCGAACAG GCCAGGCTTG TGCTCGAAAA GCTTCGGGAA GCCGGGCTGC GGCTGGCCCT CGACGACTTC GGCACCGGCC ACTCGTCGCT CTCCTATCTC ACCCGCTTCC CATTCGACAC GATCAAGATC GACAAGGCGC TGGTCCGCGA TCCAAGCGAC AAGCGCGCCG TCATCCTGCG TTCGGTGATC ACGATGGCGC GCGAGCTCGA CATGCGGGTG GTCGCGGAGG GGATCGAATC CGAAGAGGAT GCGATCCAGC TCGCGCAGAT GGGTTGCGAT TACGGTCAGA GTTTCCTGTT CGGTCCGCCG GTCGGATCGG AATCTATTCT CAGGCTCTTG AAGGAGCGGT TTCCTCTGAT GAAGCGGGCT TAA
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Protein sequence | MPLPRKPHAW PATWLTAILV ALVVFALGFG GGVAHALEPV KISREDTALD LTATTEIYSG RGDAFQVSTA PGTDGIVRRI EVRSSTESHQ GDWAVFALAN VSEEQLERVI VAPHFRLVNS KLFWPDLGSQ RILSITPSEG FALDRQPSEE ADVFRITLNP GAVITFVAEL TTPELPQIYL WQPDAYKDTV NAFTLYRGIV LGIAGLLAVF LTILFVVKGT SMLPATAALA WAVLAYICVD FGFLSKLITV TADDERIWRA GTEVFLAAGL VVFLFTYLNL NRWHQHLGYA TLAWILGLGL LFGVAVYDPA IASGIARLSF ALTATVGILL IAYLGFNRYD RAILLVPAWL LILVWLFGAW LAVTGQLAND IVQPALGGGL VLIVLLIGFT VMQHAFAGGA YQQGLFSDLE RQALALTGSG DTVWDWDVAR DRVVTIPDIS HQLGLSLGTM NGPVRNWLPR LHPDDRDRFR ATLDVLLEHR RGRLNHEFRV RAEDGHYHWL SIRARPVLGA NGEIIRCVGT IIDITEQRNS VERLLHNALL DNLTGLPNRQ VFLDRLQAIL LMGDGSSPIR PTVLAIDIDR YKQVNDMLGI AAGDNILIAL TRRLRRLLRP QDTLARLGGD QFGLILMSER DPAKIADFAD AISKAIMVPL NYGNREINLT ASIGLVAWLD QEQSAAGLLD DAELAMFRAK KAGGNRVEPF RPAFRTSGSD RLQLETDLKR AMERKELSLV YQPIVRLSDA EIAGFEALMR WEHPKRGNIS PTEFIPIAEN SELISHLGLF AFDKATSDLA EWQTQTGDLP IFVSINLSSA QLLNNELYDD MRAILSKSRC DPSQIKMELT ESLVMENPEQ ARLVLEKLRE AGLRLALDDF GTGHSSLSYL TRFPFDTIKI DKALVRDPSD KRAVILRSVI TMARELDMRV VAEGIESEED AIQLAQMGCD YGQSFLFGPP VGSESILRLL KERFPLMKRA
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