Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0527 |
Symbol | ispH |
ID | 5321361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | + |
Start bp | 568944 |
End bp | 569954 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640789461 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_001326218 |
Protein GI | 150395751 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.49504 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGCCT CATCCGTAGC AAAAACCCCG ATCACCATCC GCCTCTGCGG GCCGCGTGGC TTCTGCGCGG GCGTCGACCG GGCGATCCAG ATCGTGGTGC TTGCGCTCAA GGAGTTCGGC GCGCCGGTCT ATGTCCGTCA TGAGATCGTG CACAATCGCT ATGTCGTGGA AGGTCTTGAA GCCAAGGGTG CGATTTTCGT CGAGGAGCTC GACGAGATTC CACCCGAGCA TCGCAAGCAG CCCGTCGTCT TCTCCGCCCA CGGCGTGCCG AAATCCGTCC CCGCGGATGC GGATGCGCGC AATCTCTTCT ATCTCGATGC CACATGCCCG CTCGTCTCGA AGGTGCACAA ACAGGCTATG CGCCATCACC GTATGGGGCG CCATGTGGTG CTGATCGGCC ATGCCGGCCA TCCCGAGGTT ATCGGCACCA TGGGGCAACT GCCGGAGGGG ACGGTCTCCC TCATCGAGAC TGTCGAGGAT GTCGACGTTT ATACGCCCCC GGATCCGGAC AATCTCGGCT TTGTTACGCA GACGACGCTC TCGGTGGATG ATACCGCCGG CGTCATCAAG CGGCTCCATG AGCGCTTTCC GAACCTGACT GCGCCTGCCG CCGACTCGAT CTGCTACGCC ACCACGAACC GGCAGGAAGC GGTGAAGCAG GCTGCACCCG GCTGCGATCT TTTCCTCGTC GTCGGCGCCC CCAATTCTTC GAACTCGAAG CGCCTGGTGG AAGTAGCGCT GAGGGCCGGG GCAAAGAAAG CCGTTCTGGT TCAGCGGGCT TCTGAAATTG ACTGGGCGAC GATCGGGGAA ATCTCGACCG TCGGGTTGTC CGCCGGTGCC TCGGCGCCGG AGGTGATCGT CAATGAGATC ATCGAAGCCT TCCGCGAGCG CTACGACGCC GCGGTCGAGC TTGCCGACAC GGTGGAGGAG AACGAGCACT TCCTCGTCAA CCGCGAGCTC AGGCATGTCG AACTGACCGG CGCCGACATG GCTTTCGTCA ATGGTGAATA G
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Protein sequence | MMASSVAKTP ITIRLCGPRG FCAGVDRAIQ IVVLALKEFG APVYVRHEIV HNRYVVEGLE AKGAIFVEEL DEIPPEHRKQ PVVFSAHGVP KSVPADADAR NLFYLDATCP LVSKVHKQAM RHHRMGRHVV LIGHAGHPEV IGTMGQLPEG TVSLIETVED VDVYTPPDPD NLGFVTQTTL SVDDTAGVIK RLHERFPNLT APAADSICYA TTNRQEAVKQ AAPGCDLFLV VGAPNSSNSK RLVEVALRAG AKKAVLVQRA SEIDWATIGE ISTVGLSAGA SAPEVIVNEI IEAFRERYDA AVELADTVEE NEHFLVNREL RHVELTGADM AFVNGE
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