| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0522 |
|---|
| Symbol | |
|---|
| ID | 5321356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 565600 |
|---|
| End bp | 566196 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640789456 |
|---|
| Product | cytochrome C oxidase assembly protein |
|---|
| Protein accession | YP_001326213 |
|---|
| Protein GI | 150395746 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3175] Cytochrome oxidase assembly factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.443491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGACA CCGGGCAATC AGATCGGAAG GAACGCTCGA ACGGCGTGAT CGTCGGGACC
TGCCTCGCCT TCGTGGTCGG CATGGTGGGC ATGGCCTATG CGGCGGTGCC GCTCTACGAC
ATGTTCTGCC GTGTCACCGG GTATAACGGC ACGACGCAGA GGGTCGAGCA GGAATCCGAT
CTTATCCTGG ACGAGAAGGT CAAGGTTACG TTCGACGCCA ATGTGGCTGC CGGACTGCCC
TGGGAATTCG CACCGGTGCA ACGTGATATC GACGTCAGGA TCGGCGAGAC GGTGCAGATC
ACGTATCGCG CCAGGAACCT CGCTTCGACG CCGACGACGG GCCAGGCGAC CTTCAATGTG
ACGCCGATGG CGGCGGGCGC CTATTTCAAC AAGGTGCAGT GTTTCTGCTT CACGGAGACG
ACACTGCAGC CGGGCGAGGA AATGGAGATG CCTGTCGTTT TCTTCGTCGA TCCGGAGATC
GTCAAGACGG TCGAGACGAA GGGCATCAAG ACGTTGACAC TGTCCTACAC CTTCTACCCG
CGCGAGCCGT CCAAACCGGT TGCGCAAGTG AAGTCCAGGA CCGAAAACAA ACTTTGA
|
|---|
| Protein sequence | MADTGQSDRK ERSNGVIVGT CLAFVVGMVG MAYAAVPLYD MFCRVTGYNG TTQRVEQESD
LILDEKVKVT FDANVAAGLP WEFAPVQRDI DVRIGETVQI TYRARNLAST PTTGQATFNV
TPMAAGAYFN KVQCFCFTET TLQPGEEMEM PVVFFVDPEI VKTVETKGIK TLTLSYTFYP
REPSKPVAQV KSRTENKL
|
|---|
| |