Gene Smed_0444 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0444 
Symbol 
ID5321278 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp481216 
End bp483108 
Gene Length1893 bp 
Protein Length630 aa 
Translation table11 
GC content60% 
IMG OID640789379 
ProductK potassium transporter 
Protein accessionYP_001326136 
Protein GI150395669 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3158] K+ transporter 
TIGRFAM ID[TIGR00794] potassium uptake protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0753432 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCAAT TGTCTGCTCC CGGGGCGGAG AACACCCGCC GCCTGCTTGC CATGGCTCTC 
GGATCCGTAG GCGTCGTCTA TGGCGATATC GGCACCAGCC CGCTCTACGC TTTTCGCGAA
GCCTTGCGAC CCGTCTCGCA TGACGGTGTG ACGGACGTCG AGATCGTTGG CTTGATCTCG
CTGATGATCT GGGCGCTCAC GATCATCGTC ACCATAAAAT ACGTGCTTTT CCTGCTGCGG
GCGGACAACC AGGGCGAGGG AGGGACGCTT TCCCTGTTGG CGCTGCTCAT GAAGACGGCC
AATGGCCACA CGGCGATCCT GTTCTTCATG GGCATTGCCG GCGCGGCGCT CTTCATCGGT
GACGCGATGA TCACGCCGGC GCTGTCGGTG CTCTCGGCCG TCGAGGGGCT GAAACTGGTG
ACGCCCGCCC TTTCGGACTA CGTCGTTCCA ATCGCGGTCG TAATTCTCCT GTTTCTTTTT
GCCGTTCAGT CGAAGGGGAC CGCCGCGGTC TCGAAGTTCT TCGGGCCGAT CACCCTCGTG
TGGTTTCTGG TGATGGGTGC TGTCGGCTTC ATGCACATTG CCGATGATCT GTCGATTTTC
AGAGCCTTCA ACCCTTACTA TGCCGTCGCT TTCCTTTTCA ATGAAGGATA TGTCGGCATC
GTCGTACTCG GCGCCGTCTT TCTGACGGTT ACGGGGGCAG AGGCGCTCTA CGCCGATCTC
GGCCATTTCG GCCGCAGGCC GATCCAGTGG GCCTGGTTCA CCGTCGTCTT CCCCGCGCTC
ACGCTGAACT ACCTGGGGCA GGGCGCGTTC GTCCTCAAGA ACCCCGAAGC GATGTCAGAT
CCTTTCTTTC TGATGTTTCC CAAATGGGCG CTGCTGCCGG CCGTCATTCT TGCGACGGCA
GCGACGATTA TCGCCAGCCA AGCCGTGATC ACCGGTGCCT TTTCGCTCAC GCGTCAGGCG
ATCCACCTCG GCTTCCTGCC GCGAATGGCG ATTTTCCATA CATCCGAGAC GCATACCGGC
CAGATCTACC TGCCCAACGT CAACACGCTG CTGATGTTCG GCGTCATGGC GCTCGTCTTC
ATTTTCGGAT CGTCCGAGTC CCTCGCGACC GCATACGGCA TTTCGGTGAC TGGCGCGATG
GTGGTTACCA CCGTCCTGGC CTTCGAATTC CTGCGCATGC GTTGGAACTG GCCTGCCTGG
TGGGCGGCCG GCGTGCTGCT GCCGCTGTTC GCGCTGGAAC TCGTCTTCCT GGGCGCGAAC
ATGCTGAAGA TCCACGATGG CGGCTACGTT CCGATCCTGA TCGCGGCGAC CTTCATCGTC
ATCATGTGGA CCTGGAAGCG CGGCACCGCA ATTCTGCACA CAAAGACCCG CCACATCGAC
ATTCCACTCG AACGCTTCAT CAAATCCATC GAGCGCCAGA GCGAGCATGC ACCGGTATCG
GTCCCCGGCA CGGCGATCTT CCTCACCAGC GATCCGGAAT CGACGCCCGC CGCGCTTCTG
CACAACATCA AGCACAATCA CGTTCTGCAT CAGCAGAATT TCATCCTGAC GATCCGGACC
GCAAACACGC CGAAGGTACC CAGGGAAGAG CGGGTAAGCG CCCGGCGGCT ATCGGAGCGT
TTCACCCTGA TGGAAGTGAG GTTCGGCTTC ATGGAGACGC AGAACGTCTC ACAGGCTCTT
GGCCTTTTCC GAAAATCCGG CCTGAAGTTC GATATCATGT CGACCTCTTT CTATCTGGGC
CGCCGCAAAC TCGTGCCGGA CGCCCAGTCC GGCATGCCGC ATTGGCAGGA CCGCCTGTTC
ATCGCCCTTG CAAACGCCGC AATCGACCCC TCGGACTATT TCCGCCTGCC GACGAACCGG
GTGGTTGAAC TGGGCTCTCA CGTCATCATC TGA
 
Protein sequence
MSQLSAPGAE NTRRLLAMAL GSVGVVYGDI GTSPLYAFRE ALRPVSHDGV TDVEIVGLIS 
LMIWALTIIV TIKYVLFLLR ADNQGEGGTL SLLALLMKTA NGHTAILFFM GIAGAALFIG
DAMITPALSV LSAVEGLKLV TPALSDYVVP IAVVILLFLF AVQSKGTAAV SKFFGPITLV
WFLVMGAVGF MHIADDLSIF RAFNPYYAVA FLFNEGYVGI VVLGAVFLTV TGAEALYADL
GHFGRRPIQW AWFTVVFPAL TLNYLGQGAF VLKNPEAMSD PFFLMFPKWA LLPAVILATA
ATIIASQAVI TGAFSLTRQA IHLGFLPRMA IFHTSETHTG QIYLPNVNTL LMFGVMALVF
IFGSSESLAT AYGISVTGAM VVTTVLAFEF LRMRWNWPAW WAAGVLLPLF ALELVFLGAN
MLKIHDGGYV PILIAATFIV IMWTWKRGTA ILHTKTRHID IPLERFIKSI ERQSEHAPVS
VPGTAIFLTS DPESTPAALL HNIKHNHVLH QQNFILTIRT ANTPKVPREE RVSARRLSER
FTLMEVRFGF METQNVSQAL GLFRKSGLKF DIMSTSFYLG RRKLVPDAQS GMPHWQDRLF
IALANAAIDP SDYFRLPTNR VVELGSHVII