| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0420 |
|---|
| Symbol | |
|---|
| ID | 5321254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | - |
|---|
| Start bp | 452990 |
|---|
| End bp | 454855 |
|---|
| Gene Length | 1866 bp |
|---|
| Protein Length | 621 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640789355 |
|---|
| Product | potassium efflux system protein |
|---|
| Protein accession | YP_001326112 |
|---|
| Protein GI | 150395645 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.597186 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCCCGG CCGTTATAGC GGAAGCACCG AGCATGGAAA CGACGACGAT CATCTATTCG
CAAGCGCTCA TGCTGCTTGG AGGCGCCGTG ATCGCCGCGC CGCTGTTCAA GCGTCTCGGG
CTCGGCACCA TTCTCGGATA TCTCGCCGCC GGCATCCTGA TCGGGCCCGT CGCCCAGCAG
ATCACCGAAG GCGAAGAGAT CCTGCATGTC TCGGAGCTCG GCGTCGTCTT CCTGCTGTTC
ATCATCGGCC TTGAGCTAAA ACCGTCGCGA CTCTGGCAGA TGCGACGCGA TATATTCGGG
CTCGGCACCG CACAAGTCGT GGTCACCGGC CTCGCTCTTT CGTTCCTGAT CGCGCTCAGC
GGTCTTCTCG AAGGCGCCGC CAGCGTTGTC GCCGGCTTTG GCCTGGCGCT TTCTTCCACC
GCCTTCGCCA TGCAGATCCT GGAAGAGAAC AACGATACCA ATACACGCTA CGGCCAGCGC
GCCTTTTCCA TTCTCCTGCT CCAGGACCTT GCGATCGTTC CTCTGCTTGC AATCATTCCG
TTGATGGCGG CGCAAGCGCC GGAGGATACG ACGACGCCGC TCCAGGATTT CGCGATCGCA
ATAGCTGCCG TTGCCGCACT TTTCGCCGCC GGCCGTTATC TTCTCAACCC GCTCTTTCAG
GTGATCGCGC GTACAGGCGC GCGCGACGTG ATGATCGCAG CCGCGCTTCT CGTCGTGATG
GGCGCGGCCA CGATGATGCA GCTCGCCGGG CTTTCGATGG CAATGGGTGC CTTTCTCGCC
GGCGTGTTGC TGGCCGAATC GTCCTATCGG CACGAGCTGG AAGCCGATAT CGAGCCCTTC
CGCGGTATCC TGCAGGCGCT TTTCTTCATG GCGGTTGGCC TGTCCCTCGA GCTCCACGTC
GTGGCGGAGA ACCTCCTGAA CATCATGATC GCCGTTCCCG TTCTGATGCT GGTAAAAAGT
CTCGTTCTTT ACGGGCTTTG CCGGGCGTCA GGCTCACGGC ATAACGACGC CGTCCGCATC
GGCCTGCTTC TGCCGCAGGG CGGCGAATTC GGTTTCGTCC TCTTTACCGC TGCCGCTGCG
GCCGGGGTCT TTTCGCAGGC GACCGCCTCG CTGCTGGTCG CGATCGTCAC GCTCTCCATG
GCATTGACCC CGGTTGCGGC CATGCTCTCC AGGCGTCTGA TGCACCAGCA GGATGAAACG
GCCGAGGAGA TCGAAGAGAA TTTCGAGGGC GCCGGCGCCG ACGTGCTGAT GATCGGCTTT
TCCCGCTTCG CGCAGATCGC TTCGCAAATC CTGCTGGCCG GCGGACGCGA GGTGACGATC
ATCGACCATT CCGCCGCCCG CGTGCGCCAG GCCGCGACAT TCGGATTCCG GATCTATTTC
GGCGACGGCA CGCGCCTCGA CGTATTGAGG GCTGCCGGGA TCGAAAAAGC AAAGATCGTC
GCCGTCTGCA CGCAGAAGAA GGAGGTCACG GACAGGATCA TCGATCTCGT CCACACAGAA
TTCCCGAATG CACGCGTGTT TGCGCGCTCC TACGACCGCC AGCACACACT GGAGCTGCGC
GCACGCGGGG TCGACTACGA ATTGCGCGAG ACCTTCGAGT CGGGTTTGCT GTTCGGCCGC
AAGACGCTCG AAGCACTCGG CGTGAACGGC GACGAAGCCA TCGGCATCAT GGACGATATC
CGCCGCCGCG ACGAGGCAAG GCTGGTGCTC CAGGAAGCAG AGGGCATTAC CGCCGGCCGC
GACATGCTGC ACTCAAGACC GGTACGGCCG GAACCGCTGG TCAAGCCGAA GCGCGAGGTC
ACTCACCCCG CCGATGCCCT GCCGGGCAAC GTCGCCGGGA GCGAGACGTT GGAAAAGACG
GAGTGA
|
|---|
| Protein sequence | MSPAVIAEAP SMETTTIIYS QALMLLGGAV IAAPLFKRLG LGTILGYLAA GILIGPVAQQ
ITEGEEILHV SELGVVFLLF IIGLELKPSR LWQMRRDIFG LGTAQVVVTG LALSFLIALS
GLLEGAASVV AGFGLALSST AFAMQILEEN NDTNTRYGQR AFSILLLQDL AIVPLLAIIP
LMAAQAPEDT TTPLQDFAIA IAAVAALFAA GRYLLNPLFQ VIARTGARDV MIAAALLVVM
GAATMMQLAG LSMAMGAFLA GVLLAESSYR HELEADIEPF RGILQALFFM AVGLSLELHV
VAENLLNIMI AVPVLMLVKS LVLYGLCRAS GSRHNDAVRI GLLLPQGGEF GFVLFTAAAA
AGVFSQATAS LLVAIVTLSM ALTPVAAMLS RRLMHQQDET AEEIEENFEG AGADVLMIGF
SRFAQIASQI LLAGGREVTI IDHSAARVRQ AATFGFRIYF GDGTRLDVLR AAGIEKAKIV
AVCTQKKEVT DRIIDLVHTE FPNARVFARS YDRQHTLELR ARGVDYELRE TFESGLLFGR
KTLEALGVNG DEAIGIMDDI RRRDEARLVL QEAEGITAGR DMLHSRPVRP EPLVKPKREV
THPADALPGN VAGSETLEKT E
|
|---|
| |