Gene Smed_0381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0381 
Symbol 
ID5321215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp408389 
End bp409264 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content62% 
IMG OID640789316 
Productcarboxymethylenebutenolidase 
Protein accessionYP_001326073 
Protein GI150395606 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0412] Dienelactone hydrolase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAAC CTGTCATTAC CCAGGCGATG ATCGATGCCT ATGACGAGTA TACGCATCTC 
ACCTTGGACC GCCGCCGCTT CATGGAGAAA CTGACGGCGC TTGCCGGGAC GGCTGCCGCC
GCCGCTGCAA TCGCGCCGAT GCTGGCTGCC AACAGCGCCA AAGCCGAAAT AATCGCCGAA
ACGGACGAGC GAATCAAAGG CGAGGACATC ACCTATCCTG GCGGCGATGG CAAAATGAAG
GGTTATCTCG TGAAGCCCGC CGAAATGTCC GGCAAGCTTC CCGCCGTCAT CGTCATCCAC
GAGAATCGCG GCCTCAATCC GCACATCAGA GACGTTGCAC GCCGCATGGC GCTCGAAGGT
TTTCTGGCAC TTGCTCCCGA TTTCCTTTCG CCGGAGGGGG GAACCCCGGG CGATGAGGAC
AAGGCGCGCG AGATGATCGG CGCGCTCGAT GCAAGCGCTA CGAATGCCAA CGCCGTCGCC
ACAGTGGCCT TCCTGAAGGG TCATGCGGAA AGCACCGCCA ATGTGGGGGC GATCGGCTTT
TGCTGGGGCG GCGGTCTCGT CAACAGGCTT GCCGTGAACG CGCCTGACCT CAAGGCCGGC
GTCGCCTATT ACGGCGCCCA GCCGAAAGCC GAGGACGTGC CGAAGATCAA GGCTGCGCTG
CTGCTGCATT ATGCCGGGCT CGATGAGCGC ATCAATGCCG GCATCGAGGC CTACCGCAAG
GCGTTGACGG AAAACGGCAA GGACGCCACG ATTCACGTCT ATGAGGGCGT GAACCACGCT
TTCAACAACG ACACCTCGGC AGCCCGTTAC GACAAGGAGG CGGCCGACCT TGCCTGGCAG
CGGACCGTCG AATTCCTGAA GGCGAAGCTC GCTTAG
 
Protein sequence
MNKPVITQAM IDAYDEYTHL TLDRRRFMEK LTALAGTAAA AAAIAPMLAA NSAKAEIIAE 
TDERIKGEDI TYPGGDGKMK GYLVKPAEMS GKLPAVIVIH ENRGLNPHIR DVARRMALEG
FLALAPDFLS PEGGTPGDED KAREMIGALD ASATNANAVA TVAFLKGHAE STANVGAIGF
CWGGGLVNRL AVNAPDLKAG VAYYGAQPKA EDVPKIKAAL LLHYAGLDER INAGIEAYRK
ALTENGKDAT IHVYEGVNHA FNNDTSAARY DKEAADLAWQ RTVEFLKAKL A