| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0372 |
|---|
| Symbol | |
|---|
| ID | 5321206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 398129 |
|---|
| End bp | 399658 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640789307 |
|---|
| Product | Ppx/GppA phosphatase |
|---|
| Protein accession | YP_001326064 |
|---|
| Protein GI | 150395597 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0248] Exopolyphosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.305109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCACAG GCGCGTCACG AAGCGGCAAG GGCAAACGGA GGCGGCGCAG GCCGTCCGGT
TCGCCGTCTG CAATTGCCAG CCAATCCGGC CCGTCCGGAG AAGCAGGGCG TCCCGCAGCA
CTGAATGAGG CGGAGCCGTC GCGCAAGCGA AAACGGCGCC GGCGCTCGAA ATCAGCAAAA
CCAGAGGACT CATCTGCCGC ATCAGGTGCA CGCGCGCCGG AGCCGGATGC TGCCGCCGGC
GACAAAAAGA ACAATAAACG CAACAGGAAG GCGCGTCATC GGCGTGGCCT TCAAGGGCGG
CCGCTGGCTT CCACGAATAC GCCCCCCGCA ACTGTGCGGG CTGGCGAAGC TGTGCGCTCG
CGCAGTGGCG ACAGCGCAGC ACCGCGTCAG CAGCAGTCGC GCGCGGAGCG GCCGGGCGGT
CAACCCGGTG CGCCCTTCGT CGCGCCAAGC GAACCGCCCG CGCCGCTTTA CGCGGCGCTC
GACCTTGGCA CCAACAATTG CCGGCTGCTC ATCGCGCAGC CGACCCGGCC GGGGCAGTTC
CGTGTGGTCG ATGCGTTTTC GAGGATCGTC CGGCTGGGCG AGGGGCTCGG TGCAAGCGGA
CGGCTTTCGG ACGACGCAAT GGAGCGTTCG GTCGAAGCGC TCAAGGTCTG CGCGGCCAAG
CTCGGCGCCC GCTCGATCCG CCGTCATCGG CTGATCGCGA CGGAGGCTGC GCGCGCGGCC
GCCAATGGCG AGGCCTTCAT GCGGCGCGTC GCCGAGGAAA CCGGCCTGGA TCTCGAAATC
ATCGACCGGG AGACGGAGGC ACGGCTTGCG GTATCCGGCT GCTCGTCGCT CGTCGACCGG
GAAACCAAGT CCGTCGTCCT CTTCGATATC GGCGGCGGCT CTTCGGAAAT CGCCGTCATT
CGCATAGGTG AAAATCGTTC CAGCCGGCTT GCCAATCACA TCACCCATTG GACGTCGCTG
CCCGTCGGCG TCGTCACCCT TTCCGAGCGC CATGGCGGCG AGCATGTGAC GCCTCAAAGC
TTCGAGGTGA TGGTGCGCGA GGTCGAGGCC ATGCTCGCCG GCTTCGAGTG CCCCTCCGTC
GATGTCCTGG CAAGCGGCTC CTATAGCGAT GGCTTCCATC TGATCGGAAC TTCGGGAACC
GTCACGACGC TCGCCGGCGT GCATCTCGAC CTGCCGCGCT ACGACCGTCG CCGTGTCGAT
GGCCTATGGC TTTCGGACGA CGAGGTTTCC GCCATGCAGG CGCGCCTCCT CTCCTGGGAT
TTTGCCGCGC GTGCCGCCAA TCCCTGCATT GGGCCCGACC GGGCAGACCT GGTGCTTGCC
GGATGCGCGA TCCTCGAGGC GATCCGTCGC CGCTGGCCGT CGACCCGCAT GCGCGTTGCC
GATCGGGGGC TTCGCGAAGG GTTGCTGACC GACATGATGG CGGATGACGG GGCCTGGCGC
CGGGCGCGTC CACGCCGCCA CCAACGCAGC TTCGGTCCCC CGCAGGCGGG GGAGGAGTGC
GCGAAGCGCC ATGAAGGAAC CGACGCATGA
|
|---|
| Protein sequence | MRTGASRSGK GKRRRRRPSG SPSAIASQSG PSGEAGRPAA LNEAEPSRKR KRRRRSKSAK
PEDSSAASGA RAPEPDAAAG DKKNNKRNRK ARHRRGLQGR PLASTNTPPA TVRAGEAVRS
RSGDSAAPRQ QQSRAERPGG QPGAPFVAPS EPPAPLYAAL DLGTNNCRLL IAQPTRPGQF
RVVDAFSRIV RLGEGLGASG RLSDDAMERS VEALKVCAAK LGARSIRRHR LIATEAARAA
ANGEAFMRRV AEETGLDLEI IDRETEARLA VSGCSSLVDR ETKSVVLFDI GGGSSEIAVI
RIGENRSSRL ANHITHWTSL PVGVVTLSER HGGEHVTPQS FEVMVREVEA MLAGFECPSV
DVLASGSYSD GFHLIGTSGT VTTLAGVHLD LPRYDRRRVD GLWLSDDEVS AMQARLLSWD
FAARAANPCI GPDRADLVLA GCAILEAIRR RWPSTRMRVA DRGLREGLLT DMMADDGAWR
RARPRRHQRS FGPPQAGEEC AKRHEGTDA
|
|---|
| |