Gene Smed_0331 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0331 
Symbol 
ID5321164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp361683 
End bp362591 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content63% 
IMG OID640789266 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001326024 
Protein GI150395557 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.878588 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0471149 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAG CTACCGCAAC CACCGCCATA TCGGCCGATC CGACGCGCCG GGCGCGCCTC 
GCCGAATTCT GGTATTATTT CTCGGAGAAC CGCGGCGCCG TCTTCGGCCT GTTCTTCTTC
CTGTTCCTGG TGCTGCTCGC CATCTTCGCA CCGCTCGTGG CGCCGCATAA CCCGACCATC
CAGTTCGGCG ACGCGCGACT GGTCCCGCCG GTCTGGCAGG AAGGTGGCCG CGCGACATTC
CTGCTCGGCA CCGATGCCGT CGGCCGCGAC ATGCTCTCCC GTCTCATTTA TGGAACACGC
TTCTCACTCT TTATCGGCGT TATCGTTACG GTCTTGTCTT TGACCGGCGG CATTCTGGTC
GGCGTCATCG CCGGTTATTT CCGCGGATGG ATCGACACGG TCATCATGCG GCTGATGGAC
ATCATCCTGG CTTTCCCGTC GCTCCTTCTG GCGCTTGTCC TCGTGGCGGT GCTGGGACCT
GGCCTTACCA ATGCGATGAT CGCGATCGCA CTGGTCTTCC AGCCGCATTT CGTCCGTCTG
ACCCGAGCGG CGGTGATGAC GGAGAAGACG CGCGATTACG TCGTGGCGGC GAAGGTCGCC
GGAGCAGGCC ATGCGAGGCT CATGTTCAAG ACGATCCTGC CGAACTGCAT GGCGCCGCTC
ATCGTTCAGG CGACGCTGTC TTTCTCGAAC GCGATCCTCG ACGCGGCGGC GCTCGGCTTC
CTGGGCATGG GGGCGCAGCC GCCGACGCCG GAATGGGGAA CCATGCTTGC GGAAGCACGC
GAGTTCATCC TGCGTGCCTG GTGGGTCGTC ACGCTTCCGG GCCTCGCCAT CCTGGTGACC
GTCCTGGCCA TCAATCTGAT GGGCGATGGC CTGCGCGACG CTCTCGATCC GAAGCTGAAG
AGGTCCTGA
 
Protein sequence
MTEATATTAI SADPTRRARL AEFWYYFSEN RGAVFGLFFF LFLVLLAIFA PLVAPHNPTI 
QFGDARLVPP VWQEGGRATF LLGTDAVGRD MLSRLIYGTR FSLFIGVIVT VLSLTGGILV
GVIAGYFRGW IDTVIMRLMD IILAFPSLLL ALVLVAVLGP GLTNAMIAIA LVFQPHFVRL
TRAAVMTEKT RDYVVAAKVA GAGHARLMFK TILPNCMAPL IVQATLSFSN AILDAAALGF
LGMGAQPPTP EWGTMLAEAR EFILRAWWVV TLPGLAILVT VLAINLMGDG LRDALDPKLK
RS