| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0318 |
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| Symbol | |
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| ID | 5321150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 344380 |
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| End bp | 347796 |
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| Gene Length | 3417 bp |
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| Protein Length | 1138 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640789252 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001326011 |
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| Protein GI | 150395544 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.619733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.530694 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGAAA GACAGTATCC CTTCATCGAC ATTGCCGTGC ATGCGCGGGT GCGGGAGCAC
TTTGCCCGCG GGGATGCCTC CGTCCTCTTT TCAAGGGATA TCGCGCGGGT GCTATGGGCA
AACGACCAGG GTGCAAAGCT GTTCGGGACA GCTTCCGTTT ACGACTTCAT AGACACCGAC
CTCGATCCGA AAGACCTTTC ATTCCGCCAG TTGCGCGCGG CTGCCGCGCA GCTCGCGACT
GTCGGAGACC GGCGGCAGCT TCTGATCCGC GTGGCCGCGG GATTTCGGCG GCTTCCGCTC
GGCGCAACCG TCGAGATGAT CCGCATCGGG ACCGCCGAAG ACGCGGTTCT GTTCACGGTG
CCGGAGAACG GCAAGGCACT CTCGACCGAG GAGCGCGCCG AGGCGATGAT TGCGGGTCTC
GACGGCCCCG ATACACATAT GGCGGTACTC GACAGCGACG GCACCATCAT CGCCGGATCG
CCCGGCTTCG AGAGCCTTGG CCTCTCGGCC GATATTCGCC GCACGCTCGT TGCCGCCGTT
GCACGCGACA AGGACCGGCT GATCAAGCGT CCCGTCGCGA CGGAAAAGGG GCGCCTGCCC
GCGGCAGTCG GCAAGATTTC CGAACATCCG GCACTCCACC TGCTCTTCGC AGTCGAGGCG
ATCCTGGAAG ATTCCGAGGC CGGCGAGCCT GTCAATTCCG CAGCTCAGGG GCGGGCGGCG
TCCGCGATGC CTGGTGGAGA AATCGACGTG CAGGAGGCGG TTCCTTCGTC CACGACACCG
GCGGAGACGG ACCAGGCGCC GGCAAAGCTT GACGGCTCCG AGCGCGCTCC CGCCGGGGAG
ACGGCAGCAA CGAGCGAAGA TGAGGCGCCT ATCGAGGAAA CCACCTGCGA AGAGGTGCAA
GGGGAACGCG CTTCGAAGGA CGTGGACGCC GAGGCGGAGG CCGCCGACGC AGAGCACGCC
GCGCCGGAGA CGCTGCGCGA GACAGAAAAG GCCTCGTCCG AAAATGCGGT CGAAGCGGAC
CAGCGCCGCG AAGCCGCCGA TTTCGTCTTC GCGGCCGGCG GACGGGCGGT TCGGTTCGTC
TGGAAGATCG ACGCAGAGGG ACATTTCAGC GAAATCTCCG AAGAGTTCGC ATCGGCCGTC
GGTCCGAAAG CCGCCGACGT CATCGGCGTG ACATTTACCG AACTCGCCGG TCGCTACGGT
CTCGATCCGG ACAACAGGAT CAACGAACTT CTGCATCGCC GCGATACCTG GTCCGGCAAG
ACGATCTTCT GGCCCGTCCA GGGGACAAAT CTCAAAGTGC CCGTCGATCT TGCCGCGCTG
CCTACCTATT CCCGTTCGCG CGAATTCGAC GGTTTCCGAG GCTTCGGCAT CGTCAGGGTT
GCCGACGCCG TTCCGGACGC AAAAGCGGCC GGGCTTTCGC TCGACCGCGC GCCGGCGCAG
AAGTCGAGCG CCGCGCCCGA GGGTGCCGAC GGGCCGAATG CAGGCTCTCC CCCCGAGACC
GGACCTGCGG ACAGGCGCCA TGCGGAGGCA GGCAACGGCA AGGATGCGGA GCGTGTTGCG
CCCGATCCTT CTGAAGACCC CTTCCGCGGC GAACAGCCTG CATTGCGAGC CGTCGACACG
CCCGACCGGC CGCCCTCCGA TAAAATCATC GATCTCGACC AGCGCCGCCC GGCGGGTGCC
GGCACGCTGA CGCGCGGCGA GCAGGCAGCC TTCCGCGAAA TCGCAAAGCA GCTCGGCGAG
CATTTCAGCG TTCATGATCC GCTGCCGCCT AGCCAGACCG AAGCGGAAAG CAGACCAGAG
GCCGAGACCT TCCCGACAAG CAAGCCGGCA AACGCGGAAG AGAACGAACA CACGGAAGCG
ACAGAGGCGG CAGGCGAGCA GAAAAGCGAG GCTCCGGCTG CCGCAATGGA GCCTGGTCCC
CCTGCACGCA CCGGTGCCGG CATCAGCAGC GAAACCCTCG ACAGGCTCCC GGTGGCCTTG
CTGGTTCATC ACGGTGACGA GTTGCTGCAT GGCAATGCGG AATTTCTGCG GCTGACCGGA
TATGACGACC TCGATGCCTT TGCGCATGAG GGCGGCCTGG AGGCCCTTTT CGCCCTCGGC
AACGAGGCCG GCGCGGCAAG GCCGGATGGA ACCATGACCC TGGTCCGCAA GGATGGCAGG
CTCATACCGG TCGGCGCCCA TCTGCATTCG ATCCGGTGGG AAGGAAAGAG CGCGCTCATG
CTTGCGCTCA CTCCGGCCGG CGCAAGCGAA GCTGAAAGGC AGGCGCGCGA CGCGGAAAGC
GCAGCGGAGG CAAGCCGGCT CCGGATGGAG ATCGACGAAC TCCGATCGAT CCTGGAAACC
GCTACGGACG GTGTTGTGGT CCTCGGACAG GAGGGCGACA TCCGGACGAT GAATCGCTCC
GCAAGCGCGC TTTTCGACTA TGACGAGGCC GAGATGCGCG GGAAGCCCTT CGCCACGCTC
TTTGCTCACG AGAGCCAGAA GGCAGTGATC GATTATCTCC ACGGTCTCGC CGGCCATGGC
GTTGCAAGCG TGCTCAATGA CGGCCGGGAA GTGATCGGCC GCGAAGCTGC CGGCGGCTTC
ATTCCGCTGT TCATGACAAT CGGGCGGCTC TCCTCCTCCA ACGGCTACTG CGCCGTCATC
CGCGACATCA CTCAATGGAA GCGGACCGAA GAGGAACTGC GAAACGCCAA GCGCGCCGCC
GAGACGGCAA ATGCGCACAA GACGGAGTTT CTTGCCCGGG TCAGCCACGA GATCCGGACG
CCGCTCAACG CCATCATCGG CTTCTCCGAC ATGATGGCGA GCGAACATTT CGGCCCGATC
GGCCATCCGC GATACATCGA GTATGCCGGC GATATCGGCC GGTCGGGTCG GCATGTCCTC
GACATCGTCA ACGATCTGCT CGACATCTCG AAGATCGAGG CCGGCGAAAT GGACCTGGAC
TTCGGCGCCG TGGACCTCAA CGAAGCCGTG TCGGAGGCCG TCTCGCTGGT GCAGCCGCAG
GCCAACAGCC AGCGCGTGAT CATCCGCACA TCGCTTTCGG GCTCCGTTCC CGAGGTCGTG
GCCGACGACC GGTCGATCAA GCAGATCGCT CTGAACATTC TCGCAAATGC AATACGCTTC
ACGCCATCGG GCGGCCAGAT CGTCGTGTCG ACCTCCTACG AGGCCAATGG CAGCGTAATC
CTAAGGATCC GCGACACCGG CATCGGCATG ACCCGCAACG AGCTCGACCA GGCGATGAAG
CCCTTCCGCC AGGTCACGAC CGGCGGCCGC AAGCGTGGCG ACGGCACCGG CCTCGGCCTG
CCGCTGACGA AGGCCATGAC GGAAGCGAAC CGCGCGCAGT TCGCCATCAC ATCTGCTCCG
AATGAAGGCA CGCTGGTGGA AGTATCCTTT CCCTCACAAC GCGTCTTGGC CAATTGA
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| Protein sequence | MPERQYPFID IAVHARVREH FARGDASVLF SRDIARVLWA NDQGAKLFGT ASVYDFIDTD
LDPKDLSFRQ LRAAAAQLAT VGDRRQLLIR VAAGFRRLPL GATVEMIRIG TAEDAVLFTV
PENGKALSTE ERAEAMIAGL DGPDTHMAVL DSDGTIIAGS PGFESLGLSA DIRRTLVAAV
ARDKDRLIKR PVATEKGRLP AAVGKISEHP ALHLLFAVEA ILEDSEAGEP VNSAAQGRAA
SAMPGGEIDV QEAVPSSTTP AETDQAPAKL DGSERAPAGE TAATSEDEAP IEETTCEEVQ
GERASKDVDA EAEAADAEHA APETLRETEK ASSENAVEAD QRREAADFVF AAGGRAVRFV
WKIDAEGHFS EISEEFASAV GPKAADVIGV TFTELAGRYG LDPDNRINEL LHRRDTWSGK
TIFWPVQGTN LKVPVDLAAL PTYSRSREFD GFRGFGIVRV ADAVPDAKAA GLSLDRAPAQ
KSSAAPEGAD GPNAGSPPET GPADRRHAEA GNGKDAERVA PDPSEDPFRG EQPALRAVDT
PDRPPSDKII DLDQRRPAGA GTLTRGEQAA FREIAKQLGE HFSVHDPLPP SQTEAESRPE
AETFPTSKPA NAEENEHTEA TEAAGEQKSE APAAAMEPGP PARTGAGISS ETLDRLPVAL
LVHHGDELLH GNAEFLRLTG YDDLDAFAHE GGLEALFALG NEAGAARPDG TMTLVRKDGR
LIPVGAHLHS IRWEGKSALM LALTPAGASE AERQARDAES AAEASRLRME IDELRSILET
ATDGVVVLGQ EGDIRTMNRS ASALFDYDEA EMRGKPFATL FAHESQKAVI DYLHGLAGHG
VASVLNDGRE VIGREAAGGF IPLFMTIGRL SSSNGYCAVI RDITQWKRTE EELRNAKRAA
ETANAHKTEF LARVSHEIRT PLNAIIGFSD MMASEHFGPI GHPRYIEYAG DIGRSGRHVL
DIVNDLLDIS KIEAGEMDLD FGAVDLNEAV SEAVSLVQPQ ANSQRVIIRT SLSGSVPEVV
ADDRSIKQIA LNILANAIRF TPSGGQIVVS TSYEANGSVI LRIRDTGIGM TRNELDQAMK
PFRQVTTGGR KRGDGTGLGL PLTKAMTEAN RAQFAITSAP NEGTLVEVSF PSQRVLAN
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