| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0313 |
|---|
| Symbol | |
|---|
| ID | 5321145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 337314 |
|---|
| End bp | 338135 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640789248 |
|---|
| Product | ornithine carbamoyltransferase |
|---|
| Protein accession | YP_001326007 |
|---|
| Protein GI | 150395540 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.516071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGT GGTCACGATT CAATATCGCC TCCGTCGTTC TCGGCTTCGG CTTTCTCTAT
CTGCCGATCG TGCTCCTGGT GATCTTCTCC TTCAACGAGT CGAAGCTGGT AACGGTCTGG
GCGGGGTTTT CCACCAAGTG GTACGGCCAG CTCTGGCAGA ATCAAAGCCT TCTGGACGCG
GCATGGGTCA CGATCCGGGT CGCACTCCTT TCGGCAACCT GCGCGACCGT GCTGGGAACG
ATGGCCGCGC TCGCGCTGGT GCGCTACACC CGCTTCCGCG GGCGCGTTCT CTTTTCCGGC
ATGGTCTATG CGCCCCTGGT GATGCCGGAA GTGATAACCG GACTCTCGCT GCTTCTTCTC
TTCGTGGCGA TCGGGTTTGA CCGTGGCTTC TGGACGATCA CGCTCGCCCA CATCACCTTC
ACCATGTGTT TCGTCGCGGT CGTCGTGCAG TCGCGTCTTC TGAGCTTCGA TCAGTCGATC
GAGGAGGCCG CGCTCGATCT CGGCGCGACG CCGGTCAGGA CCTTCTTCGC GATCACCCTG
CCGGTGATCG CCCCGGCGGT CTTTTCCGGC TGGATACTCG CTTTCACGCT GTCGCTGGAC
GACCTGGTGA TCGCAAGCTT CACGACCGGG CCCGGCGCGA CGACGCTGCC GATGAAGATC
TACAGCCAGG TCCGCCTCGG CGTGACGCCG GAAATTAACG CAATCTGCAC GATCCTGATC
GGGGTCGTTG CCCTGGGCGT GATCGTCGCA TCCATCGTTA CGAGGCGTCG CGAAGCCCAG
CGGGAGAAGG ATGAGCGGGC CGCCTTCGCG GCCATCGGGT GA
|
|---|
| Protein sequence | MEKWSRFNIA SVVLGFGFLY LPIVLLVIFS FNESKLVTVW AGFSTKWYGQ LWQNQSLLDA
AWVTIRVALL SATCATVLGT MAALALVRYT RFRGRVLFSG MVYAPLVMPE VITGLSLLLL
FVAIGFDRGF WTITLAHITF TMCFVAVVVQ SRLLSFDQSI EEAALDLGAT PVRTFFAITL
PVIAPAVFSG WILAFTLSLD DLVIASFTTG PGATTLPMKI YSQVRLGVTP EINAICTILI
GVVALGVIVA SIVTRRREAQ REKDERAAFA AIG
|
|---|
| |