| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0311 |
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| Symbol | |
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| ID | 5321143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 335252 |
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| End bp | 336394 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640789246 |
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| Product | spermidine/putrescine ABC transporter ATPase subunit |
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| Protein accession | YP_001326005 |
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| Protein GI | 150395538 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.671338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGTCTC TCGGCAGTAT CCGGCGTTCT TTCGCACCAT GGGCGGACCC CGCCTCCAAA
CCATTCATTT CCTTCAAGAA CGTTACCAAG AAATTCGGTG ACTTCACCGC CGTAGACGAT
CTCTCGCTGA ATATCTACAC GCGCGAATTC TTCGCCCTGC TCGGTGCTTC GGGCTGCGGC
AAATCCACCC TCCTGCGCAT GCTGGCGGGT TTCGAGCAGC CGACATCAGG CGAAATCATT
CTCGACGGAC AGAGCCTCAC AGGCATCCCG CCCTACCGGC GTCCGGTCAA TATGATGTTC
CAGTCCTATG CGCTGTTCCC GCACATGACG GTCGAAAACA ACGTCGCCTT CGGCCTGAAG
CAGGACCGAA TGCCGAAGGC TGATATCGCC GAACGCGTCG CGCAGATGCT GAAGCTCGTC
AAGCTCGAGA AGTTCGCCAA GCGCAAGCCG CACCAGCTTT CCGGCGGCCA GCGCCAACGC
GTCGCCCTTG CCCGTTCGCT GGCCAAGCGA CCGAAGGTAT TGTTGCTCGA CGAGCCGCTC
GGTGCACTCG ACAAGAAACT GCGCGAAGAA ACGCAGTTCG AACTGATGGA TCTGCAGCAG
GAACTCGGCC TGACCTTCGT CGTCGTCACC CATGATCAGG AAGAGGCTAT GACCATGGCT
GACCGTATCG CCGTCATGAG CCACGGCAAG GTCGTCCAGG TGGCGACGCC CGCTGAAATC
TACGAAGCGC CAAATTCGCG TTTCGTTGCC GATTTCATCG GCGATGTGAA CATATTCGAC
GGGTCGGTGA CCTCGGCCGG AGACGGTTAT GTCGTCATCG AGACGACAGG CGCAATTTCG
GTGCGGATGG CATCGGCGGA GAAGCCGGCG AAGGGCGCCA GGGCCGCGGT GGCCATACGG
CCCGAGAAGA TCAGACTAAG CCGCCAGGCG CCTGCGCATG CGCCGACCAA TGCTGCCGAA
GGCGAGATAT GGGACATAGG CTATCTCGGC GACATGACGG TTTTTCACAT CCGGCTGAAG
GACGGCAAGG TCATCAAGGC ATCGTCGCTG AACGCCGTGC GGGCGGTCGA GGATCCTCTT
GGCTATGACC AGCAGGTCTG GGTCTCCTTC GGTGAAGATG CAGGCGTCGT ATTGAAGGAT
TGA
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| Protein sequence | MKSLGSIRRS FAPWADPASK PFISFKNVTK KFGDFTAVDD LSLNIYTREF FALLGASGCG
KSTLLRMLAG FEQPTSGEII LDGQSLTGIP PYRRPVNMMF QSYALFPHMT VENNVAFGLK
QDRMPKADIA ERVAQMLKLV KLEKFAKRKP HQLSGGQRQR VALARSLAKR PKVLLLDEPL
GALDKKLREE TQFELMDLQQ ELGLTFVVVT HDQEEAMTMA DRIAVMSHGK VVQVATPAEI
YEAPNSRFVA DFIGDVNIFD GSVTSAGDGY VVIETTGAIS VRMASAEKPA KGARAAVAIR
PEKIRLSRQA PAHAPTNAAE GEIWDIGYLG DMTVFHIRLK DGKVIKASSL NAVRAVEDPL
GYDQQVWVSF GEDAGVVLKD
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