| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0242 |
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| Symbol | fliF |
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| ID | 5321074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 264942 |
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| End bp | 266615 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640789177 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001325936 |
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| Protein GI | 150395469 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.176969 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGT TCGATCAATT CTCGACGTTT ACCAAGAATC TGAGCAATCT CGGACAAGGG
AAGCTCATTG CGCTGGCCGT GGCCGGCATC GTGGCGATCG GCTTCGTCCT CGGGGCCGGC
GTCTATGTCA ATCGGCCGTC CTTCGAGACG CTATATGTCG GGCTCGAACG CAGCGACGTC
ACCCAGATCA GCATTGCGCT TGCAGAGGCC AATGTCGATT TCGAAGTCGG TACCGACGGC
GGCAGCATCC AGGTGCCGGT GGGCATGACC GGCAAGGCTC GCCTGCTGCT TGCCGAACGC
GGCTTGCCGA GCAGCGCGAA TGCCGGATAC GAACTCTTCG ACAATGTCGG TTCGCTCGGG
CTCACCTCTT TCATGCAGGA AGTCACGCGC GTCCGAGCAC TCGAGGGGGA AATCGCGCGC
ACGATCCAGC AGATCTCCGG CATCGCCGCC GCGCGTGTCC ACATCGTGAT GCCGGAACGC
GGCAGCTTCC GCAAGGCCGA ACAGACGCCG ACCGCCTCCG TAATGATACG CGCAAGCGCC
ACGGTCGGTC GCAGCGCCGC CGCTTCGATC CGCCATCTGG TCGCGTCCTC CGTGCCGGGC
CTCGACGTTG ATGACGTCAC CGTGCTCGAT TCGACCGGCC AGCTTCTTGC ATCCGGCGAC
GATCCTGCAA ACAGCGCGCT CAACCAATCG CTTGGCGTCG TCCAGAACGT CCAGACCGAT
CTTGAAAAAA AGATCGACAA TGCGCTCGCG CCGTTCCTCG GAATGGACAA TTTCCGCACC
AGCGTGACGG CCAGGCTCAA CACGGATGCG CAGCAGATTC AGGAGACGGT TTTCGATCCG
GAATCGCGGG TCGAGCGTTC GACGCGTGTG ATCAAGGAAG AGCAGAAGTC CAGCCAGCAG
CAGCCGGATA ATGCCGCAAC TGTACAGCAG AACGTGCCCC AGGCGGCGCC AACCGGCGGA
GCCGGCCAAC AGTCGAGCGA CGAGGCGGCG AAAAAGGAAG AACAGACGAA TTACGAGATC
AACAGCAAGA CGATCGCGAC CGTCAAGAAC AGCTATTCGA TCGAGCGGCT TTCGATCGCG
GTGGTCGTCA ATCGCGGCCG CCTCGCTGCC ATGGCCGGCG AACCGGCGGA CCAGGCTAAG
ATCGATGCCT ATCTTGTGCA GATGCAGAAG ATCGTTGCCT CCGCCGCCGG TATCGATCCT
GGTCGCGGCG ATGTCGTTAC GCTGAACGCA ATGGACTTCG TGGAGACACA GCTGCTCGAC
CAGGCGGTGC CTGGCCCGGG GATGATGGAA GTCCTGACAC GGAACATCGG CGGCATCATC
AACGCGCTTG CTTTCGTTGC GGTTGCCTTC CTGGTGGTAT GGTTCGGGAT GAGGCCGCTT
GCGCGGCAGA TGGGCTTCGG AGGTCAGTCG GGCCAGCTCG CAGGCGAAGC CGCCGGTCTG
GAACTGCCGG ACTTCTCACC CGCCGCTGCC GGTGCAGGAG GAGCACTCAT GGAGGGTTTT
GGCTCCGACT TCGGCTTCGA CGGTGGCGAC GACCTTCTCA ATCTCGGCGA CGAGGCCGGT
TTCAACCGCC GCGTCAAGGA AGGGCCGGAA CGGCGACTTG CCCGGATGGT GGAGATCAGC
GAGGAGCGTG CGGCAAAGAT CCTGCGAAAA TGGGCACTCG ACCGCGCCGC TTGA
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| Protein sequence | MNLFDQFSTF TKNLSNLGQG KLIALAVAGI VAIGFVLGAG VYVNRPSFET LYVGLERSDV
TQISIALAEA NVDFEVGTDG GSIQVPVGMT GKARLLLAER GLPSSANAGY ELFDNVGSLG
LTSFMQEVTR VRALEGEIAR TIQQISGIAA ARVHIVMPER GSFRKAEQTP TASVMIRASA
TVGRSAAASI RHLVASSVPG LDVDDVTVLD STGQLLASGD DPANSALNQS LGVVQNVQTD
LEKKIDNALA PFLGMDNFRT SVTARLNTDA QQIQETVFDP ESRVERSTRV IKEEQKSSQQ
QPDNAATVQQ NVPQAAPTGG AGQQSSDEAA KKEEQTNYEI NSKTIATVKN SYSIERLSIA
VVVNRGRLAA MAGEPADQAK IDAYLVQMQK IVASAAGIDP GRGDVVTLNA MDFVETQLLD
QAVPGPGMME VLTRNIGGII NALAFVAVAF LVVWFGMRPL ARQMGFGGQS GQLAGEAAGL
ELPDFSPAAA GAGGALMEGF GSDFGFDGGD DLLNLGDEAG FNRRVKEGPE RRLARMVEIS
EERAAKILRK WALDRAA
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