Gene Smed_0229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0229 
Symbol 
ID5321061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp253875 
End bp254189 
Gene Length315 bp 
Protein Length104 aa 
Translation table11 
GC content60% 
IMG OID640789164 
ProductL-rhamnose 1-epimerase 
Protein accessionYP_001325923 
Protein GI150395456 
COG category[S] Function unknown 
COG ID[COG3254] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02625] L-rhamnose 1-epimerase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.187644 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.116954 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAAT ACGCCTTCCG CATGCGACTC CATCCCGGCA AGGCCGCCGA ATACCAGGCG 
CGTCACGACG CGATCCGGCC GGAGCTGGTG GCGCTTCTGA AGGACGCCGG GATTTCCGAT
TATTCGATCC ACCTCGATGA GGAGAACGAT CTGCTCTTCG GTGTGCTCTG GCGGTCCGAC
GATCACAAGA TGGCCGATCT TCCTTCGCAC CCGGTGATGC GGAAATGGTG GGCGCATATG
GCCGATATCA TGGAGACGCA TGCCGACAAC GAGCCGGTCG CCGCACCGCT CAAGACGGTC
TTTCATCTGA GATGA
 
Protein sequence
MEKYAFRMRL HPGKAAEYQA RHDAIRPELV ALLKDAGISD YSIHLDEEND LLFGVLWRSD 
DHKMADLPSH PVMRKWWAHM ADIMETHADN EPVAAPLKTV FHLR