| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0225 |
|---|
| Symbol | |
|---|
| ID | 5321057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 249084 |
|---|
| End bp | 250073 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640789160 |
|---|
| Product | rhamnose ABC transporter, periplasmic rhamnose-binding protein |
|---|
| Protein accession | YP_001325919 |
|---|
| Protein GI | 150395452 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02637] rhamnose ABC transporter, rhamnose-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.222304 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.206591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAC TGAAATCATT GATGGTGACG GCCGCCGTTA CCGCGGCGCT GATGGCCAAT
GCAGCGCATG CGGAAAACAA GAAGATAGCG CTTGTCGTCA AGGCACTGGG CATCGGCTTC
TTCGAAGCCG CCAACAAGGG TGCGCAGGAG GCGGCGAAAG AACTCGGTGA CGTCGAGATC
ATCTATACCG GCCCAACCTC GACGACCGCG GAAGGCCAGA TCGAAGTGAT CAACTCGCTG
ATCGCTCAGA AAGTCGATGC CATCGCCGTG TCGGCCAACG ACACCGACGC GCTCGTTCCG
GCGCTGAAGA AGGCGATGGA CCGCGGCATC AAGGTCATCT CCTGGGATTC GGGCGTGGCC
AAGGAAGGCC GCATGATGCA TCTCAACCCG TCATCAAGCC CGCTGATCGG CAACATGATC
ATCAAGCTCG CTGCCGACAA TCTGCCCGAG GGCGGCGATG TCGCGGTGCT TTCGGCCTCG
GCAACAGCGA CCAACCAGAA CACCTGGATC GCCGAAATGA AGAAGGTCCA GGGCAACTAC
AAGGGCATCA ATGTGGTCGC TACCGTCTAT GGCGACGACC TAGCGGACAA GTCCTATCGC
GAGACCCAGG GGCTCATCCA GTCCCATCCG AACCTGAAGG CCATCATTGC CCCGACATCC
GTCGGCATCG TCGCCGCGGC GCAGGCCGTG ACCGACGCCG GCAAGATCGG TCAGATCAAC
GTCACGGGCC TCGGCCTTCC CTCGGAGATG GCAGGGCATG TGAAGTCCGG TGCCTCGAAA
TCCTTCGCCA TCTGGAACCC GATCGACCTC GGTTATTCGG CAACGATGAT CGCCTATGAG
CTCATCAACG GTGCCGAAGC CAAGCCCGGC GCGGAACTCA AGATGGGCCG CATGGGAGCC
GTCAAGCTCG ACGAAAACAA TGAAGGCGCC ATGGCCGACC CGTTCGTCTA TGATGCTTCG
AACGTCGAGG AATTCGCGAA GATCTTCTGA
|
|---|
| Protein sequence | MKILKSLMVT AAVTAALMAN AAHAENKKIA LVVKALGIGF FEAANKGAQE AAKELGDVEI
IYTGPTSTTA EGQIEVINSL IAQKVDAIAV SANDTDALVP ALKKAMDRGI KVISWDSGVA
KEGRMMHLNP SSSPLIGNMI IKLAADNLPE GGDVAVLSAS ATATNQNTWI AEMKKVQGNY
KGINVVATVY GDDLADKSYR ETQGLIQSHP NLKAIIAPTS VGIVAAAQAV TDAGKIGQIN
VTGLGLPSEM AGHVKSGASK SFAIWNPIDL GYSATMIAYE LINGAEAKPG AELKMGRMGA
VKLDENNEGA MADPFVYDAS NVEEFAKIF
|
|---|
| |