Gene Smed_0210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0210 
Symbol 
ID5321041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp236907 
End bp237386 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content64% 
IMG OID640789144 
Productprotein tyrosine phosphatase 
Protein accessionYP_001325904 
Protein GI150395437 
COG category[T] Signal transduction mechanisms 
COG ID[COG0394] Protein-tyrosine-phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGAC CCGCCACATC GCAATCCAAG ACGCTCCGCT CGGTTCTGTT CATGTGCGGT 
ATGAACGCCA TCCGTTCTCC GATGGCCGAA GCGCTCGCCC GCGCGGCACT GCCAAAAGGC
ACCTATGTTG CCTCAGCCGG CGTCCGCCAG GGCGAGCGGG ACCCCTTCGT GGACGTGGTT
CTCGACGAGA TTGGACTGAC CATCGGCCGG CATCAGCCGC GCACCCTCGA AGAGCTCGAA
GACGATTACT TCGACCTGAT TGTGACGCTC GCGCCCGAAG CCCACCATAT GGCGCTCGAA
TTGACCCGCT CCATGGCGGT CGATGTGGTA TATTGGCCCA CACCCGACCC GACGGTTGCG
ACCGGGACAC GGGAACAGAT CGTGTCTGCC TACCGGTCGG TGCGGGATCA CCTGGCCGCG
CTGATCGCAA GCCGTCTCGC CGCCGAGGAC CACCGGAAAG GCAGTCCTCC GGCGGCATGA
 
Protein sequence
MIGPATSQSK TLRSVLFMCG MNAIRSPMAE ALARAALPKG TYVASAGVRQ GERDPFVDVV 
LDEIGLTIGR HQPRTLEELE DDYFDLIVTL APEAHHMALE LTRSMAVDVV YWPTPDPTVA
TGTREQIVSA YRSVRDHLAA LIASRLAAED HRKGSPPAA