Gene Smed_0183 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0183 
Symbol 
ID5321013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp202358 
End bp203437 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content63% 
IMG OID640789116 
ProductABC transporter related 
Protein accessionYP_001325877 
Protein GI150395410 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3839] ABC-type sugar transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGGCAA TCGCATTGAG GCAGATCCGG AAAACCTATG GCTCGCTGCA GGTCATCCAC 
GACGTCGATA TCGACATTGA AAGCGGCGAG TTTCTGGTCC TCGTCGGACC CTCCGGTTGC
GGCAAATCCA CGCTCCTGCG CATGATCGCC GGGCTGGAGG AGATTTCCGG CGGTATTCTC
GACATCGGCG GCAAGGTGGT GAACGCGCTG CCGCCATCGG ACCGCGACAT AGCCATGGTG
TTTCAAGATT ATGCGCTCTA CCCGCACATG AGCGTGCGCG AGAACATGGC GTTCGGCCTG
AAGATGCGTG GCACGGATGA CGAGACGATC GAAAAACGCG TGTCGCACGC CGCAGGCATC
CTCAAGATCC AGCCCTTCCT CGATCGGCGG CCGGCCCAGC TTTCCGGTGG CCAGCGCCAG
CGTGTCGCCA TGGGCCGCGC CATCGTGCGC GAACCCTCGG CCTTCCTCTT TGACGAGCCC
CTCTCCAACC TCGACGCGGC ACTGCGCGTC GAAATGCGCC TGGAAATCGC CAAGCTACAC
AACCGCATGA AAGCCACGAC CGTTTACGTC ACCCATGACC AGGTCGAGGC GATGACACTG
GCAGACCGCA TCGTGGTTCT GAATGCCGGC AAGATCGAGC AGATCGGCCC GCCGCTCGAT
CTCTACCACC GACCGGCCAG CCTCTTCGTC GCGCGCTTCA TCGGGAGCCC GACGATGAAT
ACCTTGCCGG CGAAGGTTGT CTCCGATGGC GGCGGCAGTG CCATACGCCT AAAAGAGCGC
ACCCTGCAGC TGGTCGGCTG GTCCGGACAG CCGATCCGCG CTGGCGAGGT CACTTTCGGC
ATTCGGCCGG AAGACCTGGT CGTCTGCCGG CCGGAAGATG CGTGGTTCAG CGGTGAGCTT
GCCGTGGCCG AGCGGCTGGG TAGCCAGACT TACGGCTATG TTGAGATCGG CGAGGAGCGG
ATGCTGACCG TCGAATTTCC GCGCAGCACG CCGATCCGCG TTGGCGAGCC GATCCATGTC
CGCCCGAACA TGGAAGCAAT CCATCTGTTC GATACCGCGA CCGGCCTGCG CAAGACCTGA
 
Protein sequence
MTAIALRQIR KTYGSLQVIH DVDIDIESGE FLVLVGPSGC GKSTLLRMIA GLEEISGGIL 
DIGGKVVNAL PPSDRDIAMV FQDYALYPHM SVRENMAFGL KMRGTDDETI EKRVSHAAGI
LKIQPFLDRR PAQLSGGQRQ RVAMGRAIVR EPSAFLFDEP LSNLDAALRV EMRLEIAKLH
NRMKATTVYV THDQVEAMTL ADRIVVLNAG KIEQIGPPLD LYHRPASLFV ARFIGSPTMN
TLPAKVVSDG GGSAIRLKER TLQLVGWSGQ PIRAGEVTFG IRPEDLVVCR PEDAWFSGEL
AVAERLGSQT YGYVEIGEER MLTVEFPRST PIRVGEPIHV RPNMEAIHLF DTATGLRKT