| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0175 |
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| Symbol | |
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| ID | 5321005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 193094 |
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| End bp | 193876 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640789108 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001325869 |
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| Protein GI | 150395402 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.42214 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAGA CACTGAAACT CCTGGCGCTG GCCACCGCTC TTGCGATCAC GGGCGCAGCG
ACCGCAGCGG CCGAACAGGT CAAGGTCGGC ATCGCAGCGG AGCCCTATCC GCCCTTTACC
TCGCCAGACG CCAGCGGAAA CTGGCAGGGC TGGGAGATCG AATTCATGAA GGCCATGTGC
GCTGAGGCCA AGCTCGACTG CGTGGTCACC CCGGTCGCCT GGGACGGCAT CATTCCGGCG
CTGACCTCGA AGAAAATCGA CATGATCATC GGTTCGCTGT CGATTACGGC GGAGCGGCAG
AAGACCATCG ATTTCTCCGA CAAATACTAC AACACGCCAA CCGGCATCAT CGGCGCCAAG
GGCGACGACA TCACACCGAC GCCGGAGGGT CTCGCCGGCA AGACGATCGG GGTGCAGGTG
TCGACCGTGC ACCAGGCCTA TGCGATGAAG CACTTTGCAC CGGCCGGGGT CGAAGTGAAG
GAATATCAGA CCCAGGACGA GGCAAACCAG GATCTCGCCG CCGGCCGCGT CGATGCCGTC
CAGGCTGACG CGATCGCCCT CGACGCCTTT CTGGAAAGCG ATCAGGGCAA GCAGTGCTGC
GATTACAAGG GCGAGGTCGC AGAGGATGTC GACGTGATCG GCCCCGGCGT CGGCGTCGGG
CTGCGCAAGG GCGAAACTGA ACTGAAGGAG AAGATCAACG CTGCCATCAA GGCGATTCGC
GAGAACGGCA CTTACGAGGC CTTCTCGAAG AAGTATTTCG ACTTCGACAT TTACGGCGGA
TAA
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| Protein sequence | MKKTLKLLAL ATALAITGAA TAAAEQVKVG IAAEPYPPFT SPDASGNWQG WEIEFMKAMC
AEAKLDCVVT PVAWDGIIPA LTSKKIDMII GSLSITAERQ KTIDFSDKYY NTPTGIIGAK
GDDITPTPEG LAGKTIGVQV STVHQAYAMK HFAPAGVEVK EYQTQDEANQ DLAAGRVDAV
QADAIALDAF LESDQGKQCC DYKGEVAEDV DVIGPGVGVG LRKGETELKE KINAAIKAIR
ENGTYEAFSK KYFDFDIYGG
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