Gene Smed_0170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0170 
Symbol 
ID5321000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp187554 
End bp188558 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content61% 
IMG OID640789103 
Productcytochrome d ubiquinol oxidase, subunit II 
Protein accessionYP_001325864 
Protein GI150395397 
COG category[C] Energy production and conversion 
COG ID[COG1294] Cytochrome bd-type quinol oxidase, subunit 2 
TIGRFAM ID[TIGR00203] cytochrome d oxidase, subunit II (cydB) 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.96994 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTTG ATCTGCCATT GATCTGGGCT GCAATCATCG CTTTCGCGGT GCTTGCCTAT 
GTCGTGCTCG ACGGCTTCGA CCTCGGCGTC GGCATACTTT TTCCGTTTTT CCCGGAGAAG
CATGACCGCG ACGTCATGAT GAACTCCGTG GCTCCTGTCT GGGACGGCAA CGAAACCTGG
CTCGTGCTCG GCGGCGGGGG TCTTCTCGCC GTGTTTCCGC TCGCCTATGC GACGGTCCTG
CCAGCACTTT ACGCACCCAT CATCGCCATG CTGATCGGCC TGATCTTCCG CGGCGTGGCT
TTCGAGTATC GCTGGCGCAC GCAGCGTGGC GAATTCCTGT GGAACTGGGC CTTTGCGGGC
GGTTCGATGC TCGCCGCCTT CGCGCAAGGG CTGGCACTCG GCGCGCTCGT GCAAGGCATA
CCGGTGGAAA ACCGGGCCTA TGCGGGCGGC TGGTGGGACT GGCTGACGCC TTTTTCAATC
GTGACCGGTT TGGCCATTAT GGTCGGTTAT TCTCTTCTTG GAGCGACCTG GCTGGTCATG
AAAACGCGTG GCGAACTCGC CGAACGCGCG CGTGGCGTCG CTCTGAGATC GGCGCTCGCT
ACCATCGCAG CCATGGGCAT CGTCAGCCTT TGGACGCCGT TTCTCGAGCC GGTCTATCTT
CAGCGTTGGT TCGGCTGGCC GACGGCGATC TTCAGCATCG TCGTGCCGCT GCTCGTCCTC
GGTTGCCTCT ACCTCCTCCT CAAAGGCATT CGCGACCGCC ACGATGTGCA GCCCTTCATT
GCCGCCCTCG GGCTTTTCGT GCTCGGCTAT ATCGGGATCG GCATCAGTTT CTATCCCTAT
ATGGTACCGC CGTCGCTGAC GATATGGGAC GCCGCCGCTC CGGACGAGAG CCTGGCTTTC
CTGCTCGTCG GCGCACTTGT GCTGATACCG ATGATCCTCG CCTATACAGC CTATGCCTAT
TGGGTTTTCC GCGGCAAAGT GGATCCGGAG GAGGGTTACC ATTGA
 
Protein sequence
MDFDLPLIWA AIIAFAVLAY VVLDGFDLGV GILFPFFPEK HDRDVMMNSV APVWDGNETW 
LVLGGGGLLA VFPLAYATVL PALYAPIIAM LIGLIFRGVA FEYRWRTQRG EFLWNWAFAG
GSMLAAFAQG LALGALVQGI PVENRAYAGG WWDWLTPFSI VTGLAIMVGY SLLGATWLVM
KTRGELAERA RGVALRSALA TIAAMGIVSL WTPFLEPVYL QRWFGWPTAI FSIVVPLLVL
GCLYLLLKGI RDRHDVQPFI AALGLFVLGY IGIGISFYPY MVPPSLTIWD AAAPDESLAF
LLVGALVLIP MILAYTAYAY WVFRGKVDPE EGYH