Gene Smed_0166 details

Gene Information

• Locus tag: Smed_0166
• Symbol: mscL
• ID: 5320996
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 184078
• End bp: 184506
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 640789099
• Product: large-conductance mechanosensitive channel
• Protein accession: YP_001325860
• Protein GI: 150395393
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.3696
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.313526
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCTGAACG AATTCAAGGA GTTTATCGCC CGCGGCAATG TCATGGACCT TGCGGTCGGC 
GTGATCATCG GTGCGGCCTT TAGCAAGATC GTCGATTCGG TCGTCAACGA CCTTGTCATG 
CCCGTCGTCG GAGCGCTCAC CGGGGGCGGC TTTGACTTCT CCGATTATTT CCTGCCTCTC 
TCGGGGAACG TCACCGCGCA GACGCTTGCG GCCGCACGTG AACAGGGCGC CGTCTTCGCT 
TACGGCAATT TCATCACCGT GTTCATCAAC TTCCTGATCC TTGCCTGGAT CATCTTTCTT 
CTGATCAAGC TGGTGAATCG CGCCCGCGCC TCGGTCGAGC GGGAAAAGGC TCCGGAACCG 
GCTGCACCTC CGCCGCAGGA CATCCTGCTT CTTTCCGAAA TTCGCGATCT CCTGAAGCAG 
CGCGCCTGA 

 

Protein sequence

MLNEFKEFIA RGNVMDLAVG VIIGAAFSKI VDSVVNDLVM PVVGALTGGG FDFSDYFLPL 
SGNVTAQTLA AAREQGAVFA YGNFITVFIN FLILAWIIFL LIKLVNRARA SVEREKAPEP 
AAPPPQDILL LSEIRDLLKQ RA