| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0165 |
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| Symbol | |
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| ID | 5320995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 180354 |
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| End bp | 183860 |
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| Gene Length | 3507 bp |
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| Protein Length | 1168 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640789098 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001325859 |
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| Protein GI | 150395392 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.53132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.851256 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCGG GTTCGGTCAT TTTTGCCTCG GCCTTCGCCT ATCTGCTGCT GCTCTTTGCA
GTTGCAAGCT ATGGCGACCG GCGAGCCAGA CGAAACAGGA TTTCCGAGAA GGGCAGGCCG
CTCGTCTATG CGCTGAGCCT TGCGATCTAT TGCACCTCCT GGACCTATTT CGGCGGCGTC
GGCCTTGCGG CGGAGCGCGG ACTCGAATTC ACCGGCATCT ACATCGGCCC GATCCTGATG
TTCACGCTCG GCATGCCGCT CATCCGGCGC ATCGTCCGGC TCGCTAAGAC CGAGAAGCTG
ACTTCGGTGG CCGACTTCGT GGCCGCGCGC TATGGCAAAA ACCCGTCCGT TGCGGCCATC
GTCGCGCTGA TCTCGCTCGT CGGCGCCGTT CCCTATATCG CGTTGCAGCT GAAGGCGGTG
TCCAGCTCCG TCGCCACGAT GATCGACACG AGCGACTATG GCATCGGTTC GGGCGAGAAT
TTCGTCGATC TGCCGCTGCT GGTGACACTG TTCCTGGCGT GTTTCGCCAT CGTCTTCGGT
ACGCGTCACA CGGACGCGAC CGAACATCAG GACGGGCTCA TCCTCGCGAT CGCGATGGAA
TCTGTGGTCA AGCTCGTCGC AATGCTCACG GTCGGCATCT ACGTCGTCTT CGTCCTGTTC
GGCGGGCCAG CGAACCTGTG GGCGGAAGCG CAGCAAAGCC CGGCCGTTCT TGCCTCGCTC
GAATATCAGA CGCCGGTCGC ACGCTGGATC CTGCTTATCG CGCTCTCGGC CTTCGGCATC
ATCATGCTCC CGCGGCAGTT CCATGTGACG GTCGTGGAAA ATCGCACCGA AAACGAGCTG
CGAACCGCAG GCGTCCTCTT TCCGCTCTAT CTGATCGCGA TCAATATCTT CGTCCTGCCG
ATCGCGATTG CCGGTGTTCT GACCTTCTCG GGCTCCGGCA ACGCGGACCT CTATCTGCTT
GCCGTGCCGC TTGCCGGCAA CGTGCCGGTC ATCACGCTGT TCACCTTCAT CGGCGGCTTT
TCCGCGGCGA CCGCCATGGT CATCGTGGCT TCGGTCGCGC TCTCGATCAT GGTCTCGAAC
GACATCGTCA TGCCGGTGTT TCTGCGCCGA AGATTGGGCA CGCGCGGCTT CCTCCAGGCG
GACATGGCAG GTACGCTCCT CAATATCCGC CGCACGGCGA TCTTCGTGGT CCTCTTTCTT
GGCTACGGCT ATTACCGTTC GGCCGATATC AGTGCCGGGC TCGCCTCGCT CGGGCTGCTC
TCCTTCGCCG CCGTTGCGCA AATGGCGCCA GCGCTTCTCG GCGGTCTCGT CTGGCGGCAG
GCCAATGCCC GCGGTGCGAT CGCGGGAATG GTCAGCGGTT TCCTCGTCTG GGCCTATGTC
CTTTTCCTGC CGAGCCTCGG CGGACCCGAC AATTCTCATA TCGCCTCGAC GATCCTTGGC
TTCCTCCTGC CTTTCACCGA CCTCTTTTCC GGGCCGCAGT CCGATCCGCT GGTGAATGCG
ACGGCTCTCA GCCTGCTCGT CAATGTCGCG GCCTATGTAG TGGGTTCGCT GACGCGCGCG
CCGAAGCCCC TGGAGCGTTT TCAGGCCGGC GTCTTCATCA CTCGCCGCTC GCGCAGCGAG
GGGACATTCC GCGGTCGCAA GACCAAGGTG ACGGTGCGCG ACCTCAAGAC CACGATCGGC
CGCTACATGG GCGAGGAGCG CATGCAGCGC TCCTTCCATA CCTATGAGCA GCAATCCGGC
CGCTGGCTGG ACGACAACGC CTCCGCCGAC ATGGCACTCG TCCATTTCTC GGAACAATTG
CTCGGCAGTG CCATCGGGTC GTCCTCGGCC CGGCTCGTTC TTTCGCTGGT CCTCCAGCGC
ATGGACGACG CCTCCTCCGA CACCGCCTGG TTGCTCGACC AGGCGAGCGA GGCGCTGCAG
TACAACCAAG ACATGCTGCA TACGGCTCTC TCTCAGATGG ATCAGGGCAT TGCCGTCTTC
GACAATGCGA ACAACCTCAT CATCTGGAAC CGCCGCTTCC GGGAACTCAT GGACCTCCCG
GAGGCCGCCG GACAGGTGGG CTTTCCGCTT GCCGATATCG TCGCGATCCT TGCCCGCCGC
GGGGATGTCC GCAAGAACGA GGAGAAGGCG CTGATCGCCA ACTTTTTGAC GCTCGACAAG
CCCTTCCTGC TCGAACTTGC GGGAGGCGCA CGCATTATCG AAGTCAGGAC CAATGCCATG
CCCGACAAGG GCATCGTCAC CACCTACACC GACATAACCC AGCGCGTGGC CGCCGACATG
GCGCTCAAAC AAGCGAACGA AACGCTGGAG CTGCGGGTCG CCGAGCGGAC AGGGGAACTC
ACACGCGTCA ATCGTGAACT GGGCGAAGCA CGGGCCGCCG CCGAAGAGGC GAATATCGGC
AAGACCCGCT TCTTCGCTGC GGCGGGTCAT GACATCCTGC AGCCCTTGAA CGCAGCGCGC
CTCTATTCCT CCTCTCTGGT CGAGCGCCTC GGCGATTCGG AAAACCGGTC GCTTGTACAA
AACATCGACT CCTCGCTCGA ATCGGTGGAG GCCATCCTCG GCGCTGTGCT CGACATCTCA
CGGCTCGATA CCGGGGCCAT GAAGCCGCGC CTGCAATCCG TTCCGCTCCA TGAACTGCTC
CGGCGGATCG AGACGGACTT CGCGCCGATG GCGAGAGCGA AAAACATCGA GCTCGTCATC
ATGCCGACCT CGCTTTCCGT GCGCAGCGAT CCGAACCTGC TCAGGCGCCT CGTTCAGAAT
CTCGTGTCCA ACGCCATCAA ATACACCCTT CGAGGCAAGG TCCTGGTCGG CGTGCGCCGG
CAAGGACAGA TGGCGACGAT CGAAGTTCTG GATTCGGGTA TCGGCATTCC TTCGTCGAAA
TTCCGCACGG TCTTCAAGGA ATTCGCGCGT CTGGACGAAG GCGCGCGAAC CGCATCTGGA
CTCGGACTCG GCCTTTCCAT CGTCGATCGC ATCTCGCGTG TGCTCAATCA CCCCGTTGCC
CTGCAATCGA AATCGGGCAA AGGAACCGGA TTCAAGGTCG CCGTGCCGAT CGACAGGAGC
GCCGCGGCAA GAGTGAAACC GCAGCCCGTG GCAGCGGCGA AAGCGAGCGA CGCCCTGGCC
GGGCTCAACG TCATCTGCAT CGACAACGAG CCGAAGATCC TCGAAGGCAT GGCCCTGCTG
CTCGGCGGCT GGGGCTGTCG CGTGACCGCC GTCGATTCAC TCGCCGGCTG CACGGAAATG
GGACCCGACA GACTGAGCGT GCGGCCCCAG GCGATCGTCG CCGATTACCA CCTTGGCGAC
GGTACCGGCG TCGAGGCGAT CGCTGCAATC CGCGGCCTGT GGCAGGAGAG CATCCCCGCC
CTCATGGTAA CGGCCGACCG TTCACCGGAG GTGCGCGGCG CTGCCGAGCG CGACGGTGTT
TCGCTACAGC ACAAGCCTGT ACGGCCCGCA GCGCTCCGCG CCTGGCTCAC GCAGCTGGCG
GTGGCGGGAC GGGCGGCGGC GGAGTAG
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| Protein sequence | MLSGSVIFAS AFAYLLLLFA VASYGDRRAR RNRISEKGRP LVYALSLAIY CTSWTYFGGV
GLAAERGLEF TGIYIGPILM FTLGMPLIRR IVRLAKTEKL TSVADFVAAR YGKNPSVAAI
VALISLVGAV PYIALQLKAV SSSVATMIDT SDYGIGSGEN FVDLPLLVTL FLACFAIVFG
TRHTDATEHQ DGLILAIAME SVVKLVAMLT VGIYVVFVLF GGPANLWAEA QQSPAVLASL
EYQTPVARWI LLIALSAFGI IMLPRQFHVT VVENRTENEL RTAGVLFPLY LIAINIFVLP
IAIAGVLTFS GSGNADLYLL AVPLAGNVPV ITLFTFIGGF SAATAMVIVA SVALSIMVSN
DIVMPVFLRR RLGTRGFLQA DMAGTLLNIR RTAIFVVLFL GYGYYRSADI SAGLASLGLL
SFAAVAQMAP ALLGGLVWRQ ANARGAIAGM VSGFLVWAYV LFLPSLGGPD NSHIASTILG
FLLPFTDLFS GPQSDPLVNA TALSLLVNVA AYVVGSLTRA PKPLERFQAG VFITRRSRSE
GTFRGRKTKV TVRDLKTTIG RYMGEERMQR SFHTYEQQSG RWLDDNASAD MALVHFSEQL
LGSAIGSSSA RLVLSLVLQR MDDASSDTAW LLDQASEALQ YNQDMLHTAL SQMDQGIAVF
DNANNLIIWN RRFRELMDLP EAAGQVGFPL ADIVAILARR GDVRKNEEKA LIANFLTLDK
PFLLELAGGA RIIEVRTNAM PDKGIVTTYT DITQRVAADM ALKQANETLE LRVAERTGEL
TRVNRELGEA RAAAEEANIG KTRFFAAAGH DILQPLNAAR LYSSSLVERL GDSENRSLVQ
NIDSSLESVE AILGAVLDIS RLDTGAMKPR LQSVPLHELL RRIETDFAPM ARAKNIELVI
MPTSLSVRSD PNLLRRLVQN LVSNAIKYTL RGKVLVGVRR QGQMATIEVL DSGIGIPSSK
FRTVFKEFAR LDEGARTASG LGLGLSIVDR ISRVLNHPVA LQSKSGKGTG FKVAVPIDRS
AAARVKPQPV AAAKASDALA GLNVICIDNE PKILEGMALL LGGWGCRVTA VDSLAGCTEM
GPDRLSVRPQ AIVADYHLGD GTGVEAIAAI RGLWQESIPA LMVTADRSPE VRGAAERDGV
SLQHKPVRPA ALRAWLTQLA VAGRAAAE
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