| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0160 |
|---|
| Symbol | |
|---|
| ID | 5320990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 176103 |
|---|
| End bp | 177473 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640789093 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001325854 |
|---|
| Protein GI | 150395387 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.538946 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGG CGACACAAAG CCTCGAGCGC GACTCCGATA GTCCCGAAGC CGGGCCATTT
ATCGTCACCA ACAGGCTGAT CTTCTCGATC GCCCTGCCGA TGACGCTCGG CTTCCTTACG
ACGCCTCTTC TCGGTCTCGT CGACACGGCC GTCGTTGGCC GGCTCGGCCG GGCGGAGTTG
CTCGCGGGCC TCGCGGTCGG CGCGGTGATC TTCGACCTCA TCTTTACCAC CTTCAACTTC
CTTCGAGCCG CGACCACGGG CCTGGTCGCA CAGGCTCTTG GACGCGGCGA TCGACGCGAG
CAGCAGGCGG TCTTCTGGCG TTCGCTTGTG ATTGCGCTCG TCACCGGCGC TGCCATCGTG
CTTATATCTC CCTTTCTGCT TTCCGCCGGC CTCTGGCTCA TGGGGCCCGG TCCGGACGTC
GCGGAGGTGA CGCGCACCTA TTTCCAATAT CGCATCCTCT CCGGCCCGGC CGCGCTCGCC
AACTACGCCA TCCTCGGATT CGTGCTCGGG CGCGGCGAGG GCACTCTTGG CCTCATGCTG
CAGACGCTGA TAAACGGCAC CAATATCGTG CTTTCGGTCC TGCTCGGCCT CGTTCTCGGC
TGGGGTGTAG CCGGCGTCGC GATCGGGACC GTCGCCGGAG AGGTTATCGG CGCGCTTGCG
GGTTTCGCGA TCGTCTATGG CCGCTTCGAC AGCAAGGACG CGCCAGGTTG GGCGATGATC
CTTGCCGGCG ACCGCCTGAA GAAATTGTTC GGTCTCAATC GCGACATCAT GATCCGATCA
TTCGCCCTTC TGGCGGCCTT CACGCTCGTG ACCCGGATCG GCACCTCCTT CGGTCCCGTG
ACGCTTGCGG CGAACGCGGT GCTGATGACG ATCTTCCTTG TGGCGGGCTA TTATCTCGAT
GGACTTGCCA CCGCCGCCGA GCAGTTGACA GGCCGATCCA TCGGCGCCGC TTATCGCCCC
GCTTTCGACC GGGTTCTGCG GATGACTGCG CTCTGGTCGC TCGGTCTCGC CGCCCTGACG
ACGCTCGCTC TGCTCGCCTT CGGCAATGCC GTGGTGAATA TGATGACCAC GGCGCCGGAT
GTGCGCGCTC TTGCTTATGA ATACATGCCA TGGGCGGCGG TGACGGCGCT GACCGGTGCT
CTTGCCTTCC TCATGGACGG CGTCTTCATC GGAGCCGGCT GGTCGCGCGA CATGCGCAAC
ATGATGCTGG CTGCCTTCAT CGGATACGTC GCAGCGCTTG CCGTGCTCGT CCCTGCCTTC
GGCAATCACG GCCTCTGGGC CGCGCTCAAC CTGTTCCTGC TCATGCGCGG CGTTTTCCTG
CTGATAAGGA TCCCGCGCCG GGCAGCTCAG ACGTTCATGC CAGTCCAGTA A
|
|---|
| Protein sequence | MMTATQSLER DSDSPEAGPF IVTNRLIFSI ALPMTLGFLT TPLLGLVDTA VVGRLGRAEL
LAGLAVGAVI FDLIFTTFNF LRAATTGLVA QALGRGDRRE QQAVFWRSLV IALVTGAAIV
LISPFLLSAG LWLMGPGPDV AEVTRTYFQY RILSGPAALA NYAILGFVLG RGEGTLGLML
QTLINGTNIV LSVLLGLVLG WGVAGVAIGT VAGEVIGALA GFAIVYGRFD SKDAPGWAMI
LAGDRLKKLF GLNRDIMIRS FALLAAFTLV TRIGTSFGPV TLAANAVLMT IFLVAGYYLD
GLATAAEQLT GRSIGAAYRP AFDRVLRMTA LWSLGLAALT TLALLAFGNA VVNMMTTAPD
VRALAYEYMP WAAVTALTGA LAFLMDGVFI GAGWSRDMRN MMLAAFIGYV AALAVLVPAF
GNHGLWAALN LFLLMRGVFL LIRIPRRAAQ TFMPVQ
|
|---|
| |