| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_0147 |
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| Symbol | |
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| ID | 5320977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | + |
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| Start bp | 162099 |
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| End bp | 165779 |
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| Gene Length | 3681 bp |
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| Protein Length | 1226 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640789080 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_001325841 |
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| Protein GI | 150395374 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.240041 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGAT CGCGATCCAC TTCTCAGCGT ATGGGCAGCC CGTCCTTGGG TGACAGGCCG
TCGCTCGATG CCCTGAACCG TACCATCGAA GGGCTCGAGG CGCGCATCGA GGGCCTGATG
AGCAGCGTCG GCCGGGAGAC CCGGCGGCCT GAGCCGCAGA ATACGGCCGA AAGCGACGCA
GTTTCCGAGA TACTCGACCG CCAGCGCGCG CTCAAGGCGG CGCGCGAGCG TTTGCCGCTG
CGCGAGCGCG CTATTCCGGT TGGTCCCGAT CGCCCGGCCC CGCCCCGCCC CGCGGCAGAG
GCGCGCTATC AGGCTCCACA AACGTCGCCG TCCACGGGGC GCTCGTCGGC TGCAGCAGAG
ATCGCCGAAG CACTTGTCGG TCTTCGGCAG GAACTGAAGC GCGATCTCGA TGACGGCCTC
TCCCGCGAGA TGCATACGCT GCGTTCGGAA ATCCGAGGCA TTAAGGCCGA GGCCGCCCAG
GATCGCCGTT TTGCCGAAGA CGTGCGGGAC GATATCGAGC GCCTTTCGGC CGGCATCAAG
GAGCTTGGCC GGCAGGCTTC GCCCGCCGAG GCCGATGCCC TCAGGATCGA ATTCGACGAA
CTGAGGGCCA TGCTAGAGGG TCTGGCGCGC GAAGAAAGCA TGCGCCGCAT GGAAAACCGA
TGGAACGGGG TCGAAGACCG CCTGAATGCA TTCGACCAGA ACAGAGACGA CGAACTTGTC
GCACTCGCCT ATCGGCTCGA CGAGATCAAG GCGCAGATCA ACTCCCTCGA CAAGGGCTCG
GCTGTCGAAG TTCTGGAGGG CAAGCTCGTC GCAGTTGCCA AGGCGATCGA GATGCTCGGC
CGCCAGATAC AGCCCGACGA CAGGCGCTTC GCTCCTCAAT TCGCCGGGCT TGACAGGCGG
CTCGATGAGA TCAGCCGCGC GATCGCCGCG GACGACCGCA ATGTTGCCGG AGCCGATGGC
TCATTCGTCG AACGCCTGGA AGGCAGGCTT ACAGATCTGT CGCGGCAGAT CGACTCCCTT
TCCGTTCGGG GGGACTCCGG CCTCGGCGCG AGGATCGAGG CGCTTGCGGC ACGCGTGGAA
GACCTCGCCA GCGAGAAGGC GGCGGCCCGC CTGGAAGAGC GTCTGGATCA GCTTTCCGCC
GTTCTGGAGC ATAGCCGGCA GGGCGCCGAG CCGGATCTCA CGGATCATCT TGCCGACATC
TCACGCAGGA TCGAGGCGCT CTCCGAATAT AGCGTCAACA ACGGATTGGC CGAGCGGCTC
GACGATCTCG CCCGCCGTAT CGAGGGTCTC GCGCCCCATG CCGAGCCCAC GGCGGACAGG
CGCTTCGACC GTCTCGAGGA TCGACTGGCG GGTATTGCCG AACGCCTGGA GGAGACGCAT
GCCGCGCCCT TCGACGACCG GCAGGCTCTG CGCAATCTCG AAGCGCAGAT CGGAAATCTC
TCCGCGCTGA TCAGCCAGTC GCACGCTGAA GCAGCCGGCC TGCCCGCCGA ATTCGAAGGC
CGCATGAACG CGCTCGAGGA CTACTTGGCG ACCAGCGACG AGTATATCAT CGAGGCCGCC
CGTCAGGCTG CGGAAGCGGT CATGGAGGCC TATTCCAGGA ACACCGCGCC GCAATTGGCG
GCGAGCACCG ACATGGCGGC GATCTCGGCG CTCGCCGAGG ATCTTCGCAG CCTGGAGGAA
CTCAGCCGGT CGAGCGACGA ACGGACCGCG CGCACCTTCG AAGCGCTGCA CGAAACGCTC
GTACACATCG CGGAAAAATT GGAGCGGCTT GAAGAGCGGG AGCCGGTTTC TCACGAACCT
TGGACAAGCG CTCCGACACC CAGGGCCGCG CCGCTCGAAT TCGCGTGCAC TTCGACCGAG
GCGGAGCAGG AGGACGAAGC GGAGCGCGCG TCCGCGAGCG AGAGCGAAAC CAACGCCCAG
GCACCGGTGC CGGCTGCCGC TGAAGCGCAT GATGCCGCCG AAGTCGCAAC GGTCGACGAC
GGCGAGATCA GGGTAGAGGC GCGTGCGGTG AAGACGAGCC TGCTTGCCGG TCTCACCCGG
CGGTTCGCGC CGAAGCCGAA CGAGGCCATG GCGACCCAGG CGCGGCAGAT GATCGAGCCC
GCTCCGTCGA TCGACCCGTC CGAAATGCTT GCTCCCGAGG ACCCCAATCA GCTCCTCGAG
CCGGGCTCCG GCGTCCCCGA CGTCAAGAAG ATTCTCGAGC GCGTTCGCGC CGGCCAGATG
GCGCGTGGTG CGCAGGAGGT GAACGAGGGC GAAAAAGCGG ATTTCATCGC GGCTGCCCGG
CGTGCGGCGC AGCTGGCGGT CGAGGAGTCC GATAGCTTGA GTCGCGCCAA GGAGAGCCGG
GAACCGTCAG CCGCTGGCGG CGCGCTCGCC CGTCATCGCC GTCCGATCCT GATGGCAGTC
GGTGCCGTGT TGCTCGCGAT CATGTCCTAT CCGCTCGTCA GCACCGTGGT GAAAGGCAAG
GAGGTGCCGG GCGCGCCGGC ACCGGCGATC GAGCGCAAGG CAGAGATCGC AAAGCCGAAG
GCAGTCGAGG ACGGCCTCGT TCAGCCGGCC TCTTCCGCAG AGGTTGCGGA GGAGGCGAGG
GCGGAAGCTC TTGCCGCGAA GGCCGAAGCG CCAACGACCG CAAAAGGAGC GCCCGCAAAA
GGGACACCGG AGCGGTCCAC CGACGCCGAT GTGCGCACGA CCGACACGGC CGGCGGCGGA
TCGAACGCCG GCCATGCCGC CTTGATGGAG CCGGCAGAGG TACAGGGGTC TCTACCCTCG
GCCTTGCAGC CGCCATCGGG CGGCGCGGTC AAGATCGAGG CTTTGGAGCC AGCCAAGGCG
AACGAAATCA TATTGCCTGA GGGGTTCGGA CCGCCGGCGC TGGTCACTGC GGCCAAGGGC
GGCGATCCTC TTGCCTTCTA CGAAATAGGC GCCCGCTACA CTGAAGGACG TGGGGTGGAG
GCGGATCGGG CGGAGGCCGT CAAGTGGTAT CAACGCGCCG CCGATGCCGG GGTGGTACCG
GCCGAATACA GGCTCGCCAG CCTCTATGAA AAAGGCGCAG GCGTTCCGCG CGATGGAGCA
AAGGCAAAGG CGCTTTATCT CAAGGCGGCG GCGGCCGGAA ATGCCAGCGC GATCCACAAC
CTCGCGGTCA TGCTCGCCGG CGGCCGGGAA GGTCCGCCGG ATCTCGCCGA GGCGGCCAAA
TGGTTTGAGA AAGCTGCCAA TCTTGGCGTG CGCGACAGCC AGTTCAATCT CGCCGTGCTC
TATGCGCGCG GCGACGGTGT GGCCCGCAAT CTGGAAAATT CCTATAAATG GTTTGCGATC
GCGGCTCGCG ACGGTGACAA GGATGCGGCG GAAAAACGGG ACGAAATCGC CAAGGCATTG
AAGCCCGAAG AGCTTTCAAG CGCCAGGGCA GCAGTCGACG CCTGGAAGCT CCAGCCCCTC
GATGCCGAAG CGAACACCGT GGAGGTCCCC GATGCCTGGA TCGGTCCCCC GACCAAGACT
GCGACCGTCG ACATGACGAG AGCCGTTCGC AACATTCAGG CAATCCTCAA CAAGAACGGC
TTCGATGCCG GCACGCCGGA CGGCCGGGTC GGCAACAAGA CGACTGCCGC CATCAAGGCC
TTTCAGAAAA CCGTCGGGCA GGAACCGACG GGCGAGATCA CCGACGCTCT GGTTCGGGAA
CTGCTGAAGC GGAACAGCTG A
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| Protein sequence | MNGSRSTSQR MGSPSLGDRP SLDALNRTIE GLEARIEGLM SSVGRETRRP EPQNTAESDA
VSEILDRQRA LKAARERLPL RERAIPVGPD RPAPPRPAAE ARYQAPQTSP STGRSSAAAE
IAEALVGLRQ ELKRDLDDGL SREMHTLRSE IRGIKAEAAQ DRRFAEDVRD DIERLSAGIK
ELGRQASPAE ADALRIEFDE LRAMLEGLAR EESMRRMENR WNGVEDRLNA FDQNRDDELV
ALAYRLDEIK AQINSLDKGS AVEVLEGKLV AVAKAIEMLG RQIQPDDRRF APQFAGLDRR
LDEISRAIAA DDRNVAGADG SFVERLEGRL TDLSRQIDSL SVRGDSGLGA RIEALAARVE
DLASEKAAAR LEERLDQLSA VLEHSRQGAE PDLTDHLADI SRRIEALSEY SVNNGLAERL
DDLARRIEGL APHAEPTADR RFDRLEDRLA GIAERLEETH AAPFDDRQAL RNLEAQIGNL
SALISQSHAE AAGLPAEFEG RMNALEDYLA TSDEYIIEAA RQAAEAVMEA YSRNTAPQLA
ASTDMAAISA LAEDLRSLEE LSRSSDERTA RTFEALHETL VHIAEKLERL EEREPVSHEP
WTSAPTPRAA PLEFACTSTE AEQEDEAERA SASESETNAQ APVPAAAEAH DAAEVATVDD
GEIRVEARAV KTSLLAGLTR RFAPKPNEAM ATQARQMIEP APSIDPSEML APEDPNQLLE
PGSGVPDVKK ILERVRAGQM ARGAQEVNEG EKADFIAAAR RAAQLAVEES DSLSRAKESR
EPSAAGGALA RHRRPILMAV GAVLLAIMSY PLVSTVVKGK EVPGAPAPAI ERKAEIAKPK
AVEDGLVQPA SSAEVAEEAR AEALAAKAEA PTTAKGAPAK GTPERSTDAD VRTTDTAGGG
SNAGHAALME PAEVQGSLPS ALQPPSGGAV KIEALEPAKA NEIILPEGFG PPALVTAAKG
GDPLAFYEIG ARYTEGRGVE ADRAEAVKWY QRAADAGVVP AEYRLASLYE KGAGVPRDGA
KAKALYLKAA AAGNASAIHN LAVMLAGGRE GPPDLAEAAK WFEKAANLGV RDSQFNLAVL
YARGDGVARN LENSYKWFAI AARDGDKDAA EKRDEIAKAL KPEELSSARA AVDAWKLQPL
DAEANTVEVP DAWIGPPTKT ATVDMTRAVR NIQAILNKNG FDAGTPDGRV GNKTTAAIKA
FQKTVGQEPT GEITDALVRE LLKRNS
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