Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0146 |
Symbol | |
ID | 5320976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 159853 |
End bp | 161649 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640789079 |
Product | acyl-CoA dehydrogenase domain-containing protein |
Protein accession | YP_001325840 |
Protein GI | 150395373 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.986474 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.238183 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCATCT ACAAGGCTCC GGTCGACGAC ACCCTGTTCA TCCTCAACGA CGTGCTCGGC ATCGAGCGCT ACCACAACCT TCCGGGCTTT GCCGACGTGA CGCCCGACAT GACGGCCGCG ATCCTGGGCG AAGCTGCAAA ACTTGCGGAA GAGGTTCTCT TCCCGATCAA TCTCTCGGGC GACCAGGAAG GCTGCAGGCG CCACGAAGAC GGCTCCGTCA CCGTGCCTGG TGGCTTCAAG GAAGCCTATG ATCTTTATCG TCAAGCCGGC TGGCTTGGCC TTGCCGCGCC CGAAGAGTTC GGCGGCCAAG GGCTGCCCTA TACGCTTCAC ACAGCCGTCG GCGAATTCAT GTCGGCCGCA AACATGTCGC TGATGATGTA TCCGGGTCTG ACGCAGGGGG CGATCGCGGC CATCCTGGTA CACGGCTCTG AGGAACAGAA GCGGGCCTAT CTGCCAAAAA TGGTTGATGG CACCTGGACC GGCACGATGA ACCTGACGGA GCCCCATTGC GGCACCGACC TCGGTCTGCT GCGCACCAGG GCCGTTCCGA ACGGCGACGG CTCGTACCGG ATTTCCGGGC AGAAGATCTT CATCTCCGCC GGCGAACACG ACATGGCCGA AAATATCGTC CACCTCGTGC TGGCACGCAT CGAGGGCGCG CCTGATGGCG TCAAGGGCAT CTCGCTGTTC ATCGTGCCGA AATTCAGGCT CGACGCAGGT GGCGAACCTA GCGAGCGCAA CGGCGTTTCC TGCGGCGCTA TCGAACACAA GATGGGCATT CACGGCAACG CCACCTGCGT CATGAACTAT GACGAGGCGA CCGGCTACCT CATCGGTACG GAGAACAAGG GGCTCAGCGC CATGTTCGTG ATGATGAACG AGGCCCGTCT GGCCGTCGGG ATGCAGGGGC TTTCGATCGC TGAAGTCGCC TATCAGAACG CCGCCAACTA CGCGCGGGAC CGTATCCAGG GCCGCTCGCT GTCCGGCCCC AAGTCGCCTG ACAAGAAGGC CGATCCTATT ATCGTCCATC CGGACATCCG CCGCGCCCTG TTGACGATCA AGGCCTTCAA CGAGGGCGGC CGCGCCTTCA CGCTCTGGAC GGCGCTGAAA TCGGACATAG CCCACCGCTC CGAAAGCGAA GAGGAACGTC AGACCGCGGA CGACATCCTC AGCCTGATGA CGCCGATCCT CAAGGGCGTG CTGACCGACA AGGGCTTCGA CCATGCGGTG ATGGCCCAGC AGGTATTCGG CGGCCACGGC TATATCGAAG AACACGGCAT GAGCCAGTAT GTGCGCGACG CCCGCATCGC CATGATCTAC GAGGGGGCCA ACGGCATCCA GGCGCTCGAC CTGGTCGGCC GGAAGCTCGC GCTGAACGGT GGCCGCGCCG TCATGGCGCT CTTCAAGGAG ATCGGCGATT TCTGCGAGGA GAACCGAAAC GACGAGAAAC TCTCCGCCTA CACGAAGGCC CTGAAGAAGG GTCTGAACGA CCTCCAGTCC GCGACCATGT GGTTCATGCA GAACGCCATG GCCAAGCCCG ACAATGCCGG TGCCGGTTCG ACCGACTATA TGCATCTCTT CGGCCTCGTC GTTCTCGGCT ATATGTGGGC GAAGATGGCG AAGACGGCTG AGGAGACGCT TGCCGCTGGC GAAACGAGGC GCGCGGACTA TCTGAAGAAC AAGCTGATTA CGGCGAAATT CTTCATGGAG CGCATCCTGC CCGAGACCGC GCTGCGCAAA GCCCGCATCG AAACAGGCGC AGACACGATG ATGGCGCTGG ACGCGGCCGC GTTCTGA
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Protein sequence | MPIYKAPVDD TLFILNDVLG IERYHNLPGF ADVTPDMTAA ILGEAAKLAE EVLFPINLSG DQEGCRRHED GSVTVPGGFK EAYDLYRQAG WLGLAAPEEF GGQGLPYTLH TAVGEFMSAA NMSLMMYPGL TQGAIAAILV HGSEEQKRAY LPKMVDGTWT GTMNLTEPHC GTDLGLLRTR AVPNGDGSYR ISGQKIFISA GEHDMAENIV HLVLARIEGA PDGVKGISLF IVPKFRLDAG GEPSERNGVS CGAIEHKMGI HGNATCVMNY DEATGYLIGT ENKGLSAMFV MMNEARLAVG MQGLSIAEVA YQNAANYARD RIQGRSLSGP KSPDKKADPI IVHPDIRRAL LTIKAFNEGG RAFTLWTALK SDIAHRSESE EERQTADDIL SLMTPILKGV LTDKGFDHAV MAQQVFGGHG YIEEHGMSQY VRDARIAMIY EGANGIQALD LVGRKLALNG GRAVMALFKE IGDFCEENRN DEKLSAYTKA LKKGLNDLQS ATMWFMQNAM AKPDNAGAGS TDYMHLFGLV VLGYMWAKMA KTAEETLAAG ETRRADYLKN KLITAKFFME RILPETALRK ARIETGADTM MALDAAAF
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