Gene Smed_0146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_0146 
Symbol 
ID5320976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp159853 
End bp161649 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content62% 
IMG OID640789079 
Productacyl-CoA dehydrogenase domain-containing protein 
Protein accessionYP_001325840 
Protein GI150395373 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.986474 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.238183 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCATCT ACAAGGCTCC GGTCGACGAC ACCCTGTTCA TCCTCAACGA CGTGCTCGGC 
ATCGAGCGCT ACCACAACCT TCCGGGCTTT GCCGACGTGA CGCCCGACAT GACGGCCGCG
ATCCTGGGCG AAGCTGCAAA ACTTGCGGAA GAGGTTCTCT TCCCGATCAA TCTCTCGGGC
GACCAGGAAG GCTGCAGGCG CCACGAAGAC GGCTCCGTCA CCGTGCCTGG TGGCTTCAAG
GAAGCCTATG ATCTTTATCG TCAAGCCGGC TGGCTTGGCC TTGCCGCGCC CGAAGAGTTC
GGCGGCCAAG GGCTGCCCTA TACGCTTCAC ACAGCCGTCG GCGAATTCAT GTCGGCCGCA
AACATGTCGC TGATGATGTA TCCGGGTCTG ACGCAGGGGG CGATCGCGGC CATCCTGGTA
CACGGCTCTG AGGAACAGAA GCGGGCCTAT CTGCCAAAAA TGGTTGATGG CACCTGGACC
GGCACGATGA ACCTGACGGA GCCCCATTGC GGCACCGACC TCGGTCTGCT GCGCACCAGG
GCCGTTCCGA ACGGCGACGG CTCGTACCGG ATTTCCGGGC AGAAGATCTT CATCTCCGCC
GGCGAACACG ACATGGCCGA AAATATCGTC CACCTCGTGC TGGCACGCAT CGAGGGCGCG
CCTGATGGCG TCAAGGGCAT CTCGCTGTTC ATCGTGCCGA AATTCAGGCT CGACGCAGGT
GGCGAACCTA GCGAGCGCAA CGGCGTTTCC TGCGGCGCTA TCGAACACAA GATGGGCATT
CACGGCAACG CCACCTGCGT CATGAACTAT GACGAGGCGA CCGGCTACCT CATCGGTACG
GAGAACAAGG GGCTCAGCGC CATGTTCGTG ATGATGAACG AGGCCCGTCT GGCCGTCGGG
ATGCAGGGGC TTTCGATCGC TGAAGTCGCC TATCAGAACG CCGCCAACTA CGCGCGGGAC
CGTATCCAGG GCCGCTCGCT GTCCGGCCCC AAGTCGCCTG ACAAGAAGGC CGATCCTATT
ATCGTCCATC CGGACATCCG CCGCGCCCTG TTGACGATCA AGGCCTTCAA CGAGGGCGGC
CGCGCCTTCA CGCTCTGGAC GGCGCTGAAA TCGGACATAG CCCACCGCTC CGAAAGCGAA
GAGGAACGTC AGACCGCGGA CGACATCCTC AGCCTGATGA CGCCGATCCT CAAGGGCGTG
CTGACCGACA AGGGCTTCGA CCATGCGGTG ATGGCCCAGC AGGTATTCGG CGGCCACGGC
TATATCGAAG AACACGGCAT GAGCCAGTAT GTGCGCGACG CCCGCATCGC CATGATCTAC
GAGGGGGCCA ACGGCATCCA GGCGCTCGAC CTGGTCGGCC GGAAGCTCGC GCTGAACGGT
GGCCGCGCCG TCATGGCGCT CTTCAAGGAG ATCGGCGATT TCTGCGAGGA GAACCGAAAC
GACGAGAAAC TCTCCGCCTA CACGAAGGCC CTGAAGAAGG GTCTGAACGA CCTCCAGTCC
GCGACCATGT GGTTCATGCA GAACGCCATG GCCAAGCCCG ACAATGCCGG TGCCGGTTCG
ACCGACTATA TGCATCTCTT CGGCCTCGTC GTTCTCGGCT ATATGTGGGC GAAGATGGCG
AAGACGGCTG AGGAGACGCT TGCCGCTGGC GAAACGAGGC GCGCGGACTA TCTGAAGAAC
AAGCTGATTA CGGCGAAATT CTTCATGGAG CGCATCCTGC CCGAGACCGC GCTGCGCAAA
GCCCGCATCG AAACAGGCGC AGACACGATG ATGGCGCTGG ACGCGGCCGC GTTCTGA
 
Protein sequence
MPIYKAPVDD TLFILNDVLG IERYHNLPGF ADVTPDMTAA ILGEAAKLAE EVLFPINLSG 
DQEGCRRHED GSVTVPGGFK EAYDLYRQAG WLGLAAPEEF GGQGLPYTLH TAVGEFMSAA
NMSLMMYPGL TQGAIAAILV HGSEEQKRAY LPKMVDGTWT GTMNLTEPHC GTDLGLLRTR
AVPNGDGSYR ISGQKIFISA GEHDMAENIV HLVLARIEGA PDGVKGISLF IVPKFRLDAG
GEPSERNGVS CGAIEHKMGI HGNATCVMNY DEATGYLIGT ENKGLSAMFV MMNEARLAVG
MQGLSIAEVA YQNAANYARD RIQGRSLSGP KSPDKKADPI IVHPDIRRAL LTIKAFNEGG
RAFTLWTALK SDIAHRSESE EERQTADDIL SLMTPILKGV LTDKGFDHAV MAQQVFGGHG
YIEEHGMSQY VRDARIAMIY EGANGIQALD LVGRKLALNG GRAVMALFKE IGDFCEENRN
DEKLSAYTKA LKKGLNDLQS ATMWFMQNAM AKPDNAGAGS TDYMHLFGLV VLGYMWAKMA
KTAEETLAAG ETRRADYLKN KLITAKFFME RILPETALRK ARIETGADTM MALDAAAF